Camelia, the Perl 6 bug

IRC log for #cdk, 2007-10-04

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All times shown according to UTC.

Time Nick Message
01:21 CIA-31 jmol: hansonr * r8349 /trunk/Jmol/src/org/jmol/ (5 files in 3 dirs): (log message trimmed)
01:21 CIA-31 jmol: 11.3.29_dev new feature: fully generalized bond order "partial n.m"
01:21 CIA-31 jmol: # n = number of lines, up to 5
01:21 CIA-31 jmol: # m = binary mask for dottedness, up to 31 (0x1F)
01:21 CIA-31 jmol: # 00001 first line of bond dotted
01:21 CIA-31 jmol: # 00010 second line of bond dotted
01:21 CIA-31 jmol: # 00011 first and second line of bond dotted, etc.
01:43 CIA-31 jmol: hansonr * r8350 /trunk/Jmol/src/org/jmol/viewer/ (Compiler.java Eval.java JmolConstants.java): 11.3.29_dev new feature: adds x = connected("partial 2.1")
01:53 CIA-31 jmol: hansonr * r8351 /trunk/Jmol/src/org/jmol/ (23 files in 7 dirs): # new feature: preliminary work on functionalized state
02:18 CIA-31 jmol: hansonr * r8352 /trunk/Jmol/src/org/jmol/viewer/ (Compiler.java Eval.java Jmol.properties Viewer.java):
02:18 CIA-31 jmol: 11.3.29 new feature: global/local functions (to applet, for instance
02:18 CIA-31 jmol: # in general, functions are global -- common to all applets.
02:18 CIA-31 jmol: # first-character "_" indicates this function is a LOCAL function, private to this applet.
02:18 CIA-31 jmol: # (It is important for functionalized state that those functions be local, for instance.)
05:31 carsten joined #cdk
06:31 rojasm_ joined #cdk
06:46 thomas_ku joined #cdk
06:47 thomas_ku moin
06:47 rojasm_ moin thomas_ku
06:48 thomas_ku rojasm_:Hi
06:48 thomas_ku do you know an xml representation of the periodic table of elements?
06:49 rojasm_ what do you mean with representation
06:49 rojasm_ a xml with the properties of all elements
06:55 thomas_ku yes thats what I mean and with the element name etc.
07:01 rojasm_ there is in cdk differents but
07:02 rojasm_ I don't think that only one gives all information that you want
07:03 rojasm_ org.opensicence.cdk.config.data
07:03 thomas_ku ok thanks I will look into this
07:21 jpansanel moin
08:04 jonalv joined #cdk
08:22 masak joined #cdk
09:09 jbrefort joined #cdk
09:20 carsten joined #cdk
11:25 jpansanel hi carsten
11:26 carsten moin moin
11:26 * carsten opens your page
11:26 carsten what is the URL again?
11:43 CIA-31 bioclipse: carl_masak * r3924 /trunk/plugins/net.bioclipse.cdk.ui/src/net/b​ioclipse/plugins/views/Structure2DView.java:
11:43 CIA-31 bioclipse: [Structure2DView.java]
11:43 CIA-31 bioclipse: * fixed inexplicable bug in which all molecules always showed
11:43 CIA-31 bioclipse:  up in backwards order
11:46 carsten http://chem-file.sourceforge.net/
11:46 carsten jpansanel: http://chem-file.sourceforge.net/d​ata/aldehydes/formaldehyde_de.html
11:46 carsten that is in fact called Formaldehy
11:46 carsten that is in fact called Formaldehyd
11:56 CIA-31 bioclipse: carl_masak * r3925 /trunk/plugins/net.bioclipse.cdk.ui/src/net/b​ioclipse/plugins/views/Structure2DView.java:
11:56 CIA-31 bioclipse: [Structure2DView]
11:56 CIA-31 bioclipse: * Slight improvement to readability
12:29 jpansanel carsten : ok
12:29 jpansanel I've added the german name
12:37 CIA-31 jmol: hansonr * r8353 /trunk/Jmol/src/org/jmol/ (14 files in 8 dirs):
12:37 CIA-31 jmol: version=11.3.29_dev
12:37 CIA-31 jmol: # new feature: select ISAROMATIC # selects aromatic atoms
12:37 CIA-31 jmol: # new feature: MOL reader recognizes bond types 4,5,6,7
12:37 CIA-31 jmol: # new feature: isosurface/mo "squared"
13:44 edrin joined #cdk
14:00 CIA-31 bioclipse: carl_masak * r3926 /trunk/plugins/net.bioclipse.statistics/sr​c/net/bioclipse/model/MatrixResource.java:
14:00 CIA-31 bioclipse: [MatrixResource.java]
14:00 CIA-31 bioclipse: * different regular expression to recognize several whitespace characters in a row
14:01 carsten jpansanel: here?
14:01 carsten jpansanel: do you have a 3d version of water?
14:01 carsten not one molecule but many
14:59 CIA-31 bioclipse: carl_masak * r3927 /trunk/plugins/net.bioclipse.chart/src/​net/bioclipse/dialogs/ChartDialog.java:
14:59 CIA-31 bioclipse: [ChartDialog.java]
14:59 CIA-31 bioclipse: * removed unused imports
14:59 CIA-31 bioclipse: * removed unused instance variables
15:00 CIA-31 bioclipse: * commented out dubious non-Eclipse-3.2 line
15:00 CIA-31 bioclipse: * fixed indentation
15:00 rojasm_ left #cdk
15:19 edrin left #cdk
17:05 carsten joined #cdk
18:49 CIA-31 cdk: rajarshi * r9013 /trunk/cdk/src/org/openscience/cdk/test/​smiles/smarts/parser/RecursiveTest.java: Added a new test case with a SMARTS for a basic amine that is failing
19:22 CIA-31 cdk: rajarshi * r9014 /trunk/cdk/src/org/openscience/cdk/test/​smiles/smarts/parser/RecursiveTest.java: Updated the basic amine test
20:38 jbrefort joined #cdk
21:08 CIA-31 cdk: djiao * r9015 /trunk/cdk/src/org/openscience/cdk/isomorp​hism/matchers/smarts/TotalHCountAtom.java: Fixed a bug reported in RecursiveTest.testRecursiveSmarts25 - where the Total H atom count doesn't match correctly.
23:15 CIA-31 jmol: hansonr * r8354 /trunk/Jmol/src/org/jmol/ (10 files in 3 dirs): (log message trimmed)
23:15 CIA-31 jmol: version=11.3.29
23:15 CIA-31 jmol: # new feature: aromaticSingle and aromaticDouble bond order options
23:15 CIA-31 jmol: # new feature: "smartaromatic" bonds # turned off with "smartAromatic = false"
23:15 CIA-31 jmol: # new feature: calculate aromatic # calculates reasonable aromatic double/single alternation.
23:15 CIA-31 jmol: # new feature: reset aromatic # sets all aromaticDouble and aromaticSingle back to aromatic
23:15 CIA-31 jmol: # new feature: select ISAROMATIC # selects aromatic atoms

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