Camelia, the Perl 6 bug

IRC log for #cdk, 2007-10-21

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All times shown according to UTC.

Time Nick Message
02:13 CIA-31 jmol: hansonr * r8474 /trunk/Jmol/src/org/jmol/ (10 files in 4 dirs): version=11.3.35 # POV-Ray text -- ALL text (echos, labels, axes, etc.)
03:19 CIA-31 jmol: hansonr * r8475 /trunk/Jmol/src/org/jmol/ (export/Export3D.java g3d/Graphics3D.java): 11.3.35 VERSION
06:05 jbrefort joined #cdk
06:22 carsten joined #cdk
06:41 jbrefort joined #cdk
07:01 carsten ok, offline for 10 days
07:06 egonw joined #cdk
08:05 CIA-31 cdk: egonw * r9146 /trunk/cdk/src/org/openscience/cdk/test​/atomtype/CDKAtomTypeMatcherTest.java: Added a few trickier structures for atom type perception.
08:08 CIA-31 cdk: egonw * r9147 /trunk/cdk/src/org/openscience/cdk/test/aromat​icity/CDKHueckelAromaticityDetectorTest.java: Added links in JavaDoc to point to JUnit tests that the tests depend on. (There must be a better way, I guess...)
09:27 CIA-31 cdk: egonw * r9148 /trunk/cdk/src/org/openscience/cd​k/config/data/cdk_atomtypes.xml: Charge 0 is with a zero, not a capital 'o' :)
09:31 CIA-31 cdk: egonw * r9149 /trunk/cdk/src/org/openscience/cdk/ (3 files in 3 dirs): Added the N.amide atom type
10:07 CIA-31 cdk: egonw * r9150 /trunk/cdk/src/org/openscience/cdk​/atomtype/CDKAtomTypeMatcher.java: Code clean up: reuse of existing method.
15:51 jbrefort joined #cdk
17:25 CIA-31 cdk: egonw * r9151 /trunk/cdk/src/org/openscience/cdk​/atomtype/CDKAtomTypeMatcher.java: Deal with S and N which can be sp2 when in a ring, due to delocalization
17:41 egonw joined #cdk
17:46 CIA-31 cdk: egonw * r9152 /trunk/cdk/src/org/openscience/cd​k/templates/MoleculeFactory.java: Added adenine to the factory (InChI in JavaDoc).
18:24 CIA-31 cdk: egonw * r9153 /trunk/cdk/src/org/openscience/cdk/ (3 files in 3 dirs): Fixed misassignement to N.sp2 for N.planar3 atom types
19:45 CIA-31 cdk: egonw * r9154 /trunk/cdk/src/org/openscience/cdk/to​ols/manipulator/RingManipulator.java: Assigned to a module
19:45 CIA-31 cdk: egonw * r9155 /trunk/cdk/src/net/sf/cdk/tool​s/doclets/CDKInChITaglet.java: Applies to methods too
19:48 CIA-31 cdk: egonw * r9156 /trunk/cdk/javadoc.xml: Fixed doclet class name
19:59 CIA-31 jmol: nicove * r8476 /trunk/Jmol/src/org/jmol/viewer/Jmol.properties: Version
20:32 CIA-31 cdk: egonw * r9157 /trunk/cdk/develjar/ (com-sun-javadoc.jar com-sun-tools-doclets-Taglet.jar): Updated to gjdoc 0.7.8, but still no Tag.position() :(
20:33 CIA-31 cdk: egonw * r9158 /trunk/cdk/src/net/sf/cdk/too​ls/doclets/CDKSVNTaglet.java: Working on a taglet to link to SVN
20:36 CIA-31 jmol: nicove * r8477 /trunk/Jmol-FAH/projects/p3766.xyz.gz: Folding@Home
20:43 egonw joined #cdk
20:47 CIA-31 cdk: egonw * r9159 /trunk/cdk/src/org/openscience/cdk/ (3 files in 2 dirs): Moved CDK atom typer to 'standard' as SpanningTree and PathTools cannot yet be moved to 'core' (BTW, a proper descriptiong of modules would be nice)
21:43 CIA-31 cdk: egonw * r9160 /trunk/cdk/develjar/ (com-sun-javadoc.jar com-sun-tools-doclets-Taglet.jar): Uploaded jars from a patched 0.7.8 gjdoc release. Patch available from https://bugs.launchpad.net/ubu​ntu/+source/gjdoc/+bug/155519
22:02 CIA-31 cdk: egonw * r9161 /trunk/cdk/src/net/sf/cdk/too​ls/doclets/CDKSVNTaglet.java: OK, now that Tag.position() is found, I wrote up the full implementation
22:02 CIA-31 cdk: egonw * r9162 /trunk/cdk/src/org/openscienc​e/cdk/interfaces/IAtom.java: Example use of @cdk.svnrev
22:07 CIA-31 cdk: egonw * r9163 /trunk/cdk/javadoc.xml: Use the new Taglet too
22:59 CIA-31 cdk: rajarshi * r9164 /trunk/cdk/src/org/openscience/cdk/exception/ (5 files): Added cdk.svnrev tag to a few files
23:11 CIA-31 cdk: rajarshi * r9165 /trunk/cdk/src/org/openscience/cdk/ (44 files in 3 dirs): Added cdk.svnrev tags to a bunch of files. Some files that do not have a cdk.modle tag willnot have the cdk.svnrev tag. Probably will need to do another pass
23:19 CIA-31 jmol: hansonr * r8478 /trunk/Jmol/src/org/jmol/ (24 files in 7 dirs):
23:19 CIA-31 jmol: version=11.3.35_dev -- first pass antialiasing for display and images
23:19 CIA-31 jmol: # set antialiasDisplay T/F (false by default)
23:19 CIA-31 jmol: # set antialiasImages T/F (true by default)
23:19 CIA-31 cdk: rajarshi * r9166 /trunk/cdk/src/org/openscience/cdk/ (44 files in 6 dirs): Added yet more cdk.svnrev tags
23:26 CIA-31 cdk: rajarshi * r9167 /trunk/cdk/src/org/openscience/cdk/ (77 files in 11 dirs): Added more cdk.svnrev tags
23:37 CIA-31 cdk: rajarshi * r9168 /trunk/cdk/src/org/openscience/cdk/ (293 files in 24 dirs): A ton more cdk.svnrev tags added
23:44 CIA-31 cdk: rajarshi * r9169 /trunk/cdk/src/org/openscience/cdk/ (89 files in 13 dirs): More cdk.svnrev tags

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