Camelia, the Perl 6 bug

IRC log for #cdk, 2007-10-23

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All times shown according to UTC.

Time Nick Message
00:05 CIA-15 joined #cdk
02:18 CIA-15 jmol: hansonr * r8496 /trunk/Jmol/src/org/jmol/ (4 files in 2 dirs): 11.3.37_dev # new feature: {atomExpression}.color = "red" (or "[xff0000]" or {255,0,0}
05:31 jbrefort joined #cdk
06:29 rojasm joined #cdk
07:36 egonw joined #cdk
07:45 CIA-15 cdk: egonw * r9173 /trunk/cdk/src/org/openscience/cd​k/templates/MoleculeFactory.java: Added cyclobutadiene
07:50 CIA-15 cdk: egonw * r9174 /trunk/cdk/src/org/openscience/cdk/test/c​onfig/atomtypes/AtomTypeReaderTest.java: Added a test for reading the CDK atom type list
07:54 jonalv joined #cdk
08:03 CIA-15 cdk: egonw * r9175 /trunk/cdk/src/org/openscience/cdk/tool​s/manipulator/RingSetManipulator.java: Fixed a ClassCastException
08:04 CIA-15 cdk: egonw * r9176 /trunk/cdk/src/org/openscience/cdk​/atomtype/CDKAtomTypeMatcher.java: Fixed detection of [cH+] atom types (sp2 but charged)
08:07 CIA-15 cdk: egonw * r9177 /trunk/cdk/src/org/openscience/cdk/test/aromat​icity/CDKHueckelAromaticityDetectorTest.java: Added cyclobutadiene (which is anti-aromatic) and some better feedback for some other tests
08:08 CIA-15 cdk: egonw * r9178 /trunk/cdk/src/org/openscience/cdk/aromat​icity/CDKHueckelAromaticityDetector.java: Completed algorithm: 1. now counts the electrons in the ring and tests for 4n+2; 2. also takes into account the larger ring of 2 fused rings (such as azulene), but nothing larger as that is not well defined.
08:09 egonw OK, that's my work of last night
08:41 CIA-15 bioclipse: ospjuth * r4040 /trunk/playground/plugins/net.bioclip​se.biomoby/src/net/bioclipse/biomoby/ (3 files in 2 dirs): Saving results works (but not good)
08:41 masak joined #cdk
08:48 jpansanel moin
08:58 jbrefort salut jpansanel
08:58 jpansanel salut jbrefort
09:44 CIA-15 jmol: nicove * r8497 /trunk/Jmol-FAH/src/org/jm​ol/fah/Contribution.java: Folding@Home
11:48 masak I have 39 "missing library" errors when I check out cdk via svn
11:48 masak is that intentional -- i.e. is it up to me to get these .jar files?
11:57 CIA-15 bioclipse: jonalv * r4041 /trunk/playground/plugins/ (2 files in 2 dirs): continued work with adopting the usermanager into accepting many accounts of the same account type
12:15 CIA-15 blueobelisk: baoilleach * r148 /userscripts/trunk/AddtoConnotea.user.js:
12:15 CIA-15 blueobelisk: (1) Added code to automatically update.
12:15 CIA-15 blueobelisk: (2) Replaced my popup with Connotea's popup
12:39 egonw joined #cdk
13:08 CIA-15 cdk: egonw * r9179 /trunk/cdk/src/org/openscience/​cdk/nonotify/NNPseudoAtom.java: Fixed constructor: should simply call super().
13:20 CIA-15 cdk: egonw * r9180 /branches/cdk-1.0.x/src/org/openscie​nce/cdk/nonotify/NNPseudoAtom.java: Applied r9179 form trunk: fixed constructor: should simply call super()
13:44 CIA-15 cdk: egonw * r9181 /branches/cdk-1.0.x/src/data​/mdl/shortest_path_test.mol: Fixed format.
13:58 jonalv joined #cdk
14:20 CIA-15 cdk: egonw * r9182 /branches/cdk-1.0.x/src/org/opens​cience/cdk/graph/PathTools.java: Applied patch by volker_h: fixes getShortest path bug
14:22 CIA-15 cdk: egonw * r9183 /trunk/cdk/src/org/openscien​ce/cdk/graph/PathTools.java: Merge patch 9182 from branches/cdk-1.0.x/: Applied patch by volker_h: fixes getShortest path bug
14:49 CIA-15 cdk: egonw * r9184 /branches/cdk-1.0.x/src/org/opensc​ience/cdk/qsar/descriptors/atomic/ (5 files): Fixed bug: find a clonedAtom in a clonedAtomContainer
14:57 CIA-15 cdk: egonw * r9185 /trunk/cdk/src/org/openscience​/cdk/qsar/descriptors/atomic/ (5 files): Merge patch 9184 from branches/cdk-1.0.x/: fixed bug: find a clonedAtom in a clonedAtomContainer
16:23 test joined #cdk
16:23 Topic for #cdkis now The Chemistry Development Kit (http://cdk.sf.net) | JUnit: 3597 test, 43 fails + 68 errors (3.09%) | CDK 1.0.x TODO: see http://cdk.sf.net/wiki/ | Logs at http://moritz.faui2k3.org/​irclog/out.pl?channel=cdk
16:23 Topic for #cdkis now The Chemistry Development Kit (http://cdk.sf.net) | JUnit: 3597 test, 43 fails + 68 errors (3.09%) | CDK 1.0.x TODO: see http://cdk.sf.net/wiki/ | Logs at http://moritz.faui2k3.org/​irclog/out.pl?channel=cdk
16:37 CIA-15 bioclipse: jonalv * r4042 /trunk/playground/plugins/ (22 files in 6 dirs): fixed last test and did some refactoring from the name Keyring into Usermanager and from SuperUser to User
16:56 rguha joined #cdk
18:18 CIA-15 jmol: nicove * r8498 /trunk/Jmol-FAH/projects/p2970.xyz.gz: Folding@Home
19:50 CIA-15 jmol: hansonr * r8499 /trunk/Jmol/src/org/jmol/ (6 files in 2 dirs):
19:50 CIA-15 jmol: version=11.3.37_dev # new feature: @{mathExpression} for echos, select, etc. where @x can be used.
19:50 CIA-15 jmol: # select atomno=@{xlist[1]}
19:50 CIA-15 jmol: # color atoms @{xlist[n]}
23:15 CIA-15 jmol: hansonr * r8500 /trunk/Jmol/src/org/jmol/ (3 files in 2 dirs): version=11.3.37_dev # bug fix: -- adds antialiasing for translucent objects

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