Camelia, the Perl 6 bug

IRC log for #cdk, 2007-10-26

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All times shown according to UTC.

Time Nick Message
00:07 CIA-15 cdk: rajarshi * r9234 /trunk/cdk/src/org/openscience/cdk​/test/CoverageAnnotationTest.java: Updated to use the Stirng version of TestClass
00:08 CIA-15 cdk: rajarshi * r9235 /trunk/cdk/src/org/openscience/cdk​/test/CoverageAnnotationTest.java: got rid of unecessary code
00:09 CIA-15 cdk: egonw * r9236 /trunk/cdk/ (54 files in 4 dirs): Moved module test suites into test.modulesuites
00:55 CIA-15 cdk: egonw * r9237 /branches/cdk-1.0.x/src/org/openscien​ce/cdk/test/qsar/descriptors/atomic/ (5 files): Commented out dump to STDOUT.
06:34 rojasm joined #cdk
06:40 jbrefort joined #cdk
08:01 egonw joined #cdk
08:03 egonw moin
08:04 jonalv joined #cdk
08:04 rojasm moin
08:05 rojasm egonw about the next week for me es perfect. But I thought that it is my time to visit :)
08:11 egonw joined #cdk
08:21 jpansanel moin
08:37 CIA-15 bioclipse: carl_masak * r4072 /trunk/playground/plugins/net.bioclipse.​expression/src/net/bioclipse/expression/ (Calculator.java FunctionBody.java):
08:37 CIA-15 bioclipse: [net.bioclipse.expression]
08:37 CIA-15 bioclipse: * started implementing dynamic function application
08:37 CIA-15 bioclipse: * changed interface of FunctionBody to accept SymbolicExpression[]
08:51 CIA-15 bioclipse: carl_masak * r4073 /trunk/playground/plugins/ (9 files in 3 dirs):
08:51 CIA-15 bioclipse: [Calculator.java]
08:51 CIA-15 bioclipse: * changed yet again the way functions accept parameters
08:51 CIA-15 bioclipse: [FunctionBody.java]
08:51 CIA-15 bioclipse: * reflected here too
08:51 CIA-15 bioclipse: [ast]
08:51 CIA-15 bioclipse: * Deleted the whole Functions hierarchy
09:03 CIA-15 bioclipse: jonalv * r4074 /trunk/playground/plugins/ (2 files in 2 dirs): Added test for adding a new function to the calculator
09:04 CIA-15 bioclipse: carl_masak * r4075 /trunk/playground/plugins/net.bioclip​se.expression.tests/src/net/bioclipse​/expression/tests/FunctionsTest.java:
09:04 CIA-15 bioclipse: [FunctionsTest.java]
09:04 CIA-15 bioclipse: * removed pesky @Override
09:09 CIA-15 bioclipse: carl_masak * r4076 /trunk/playground/plugins/net.bioclip​se.expression.tests/src/net/bioclipse​/expression/tests/VariablesTest.java:
09:09 CIA-15 bioclipse: [VariablesTest.java]
09:09 CIA-15 bioclipse: * added tests for case insensitivity
09:19 CIA-15 bioclipse: carl_masak * r4077 /trunk/playground/plugins/net.bioclipse.expressi​on/src/net/bioclipse/expression/Calculator.java:
09:19 CIA-15 bioclipse: [Calculator.java]
09:19 CIA-15 bioclipse: * added addVariable and addFunction methods
09:20 CIA-15 bioclipse: jonalv * r4078 /trunk/playground/plugins/ (4 files in 2 dirs):
09:20 CIA-15 bioclipse: Added enum paramatertype with the values ZERO_PARAMS, ONE_PARAMS, MULTI_PARAMS
09:20 CIA-15 bioclipse: Also wrote functionsbodyadaptor implementing getParamatertype and constructor taking paramtertype
09:20 CIA-15 bioclipse: carl_masak * r4079 /trunk/playground/plugins/net.bioclip​se.expression.tests/src/net/bioclipse​/expression/tests/VariablesTest.java:
09:20 CIA-15 bioclipse: [VariablesTest.java]
09:20 CIA-15 bioclipse: * fixed test
09:35 CIA-15 bioclipse: carl_masak * r4080 /trunk/playground/plugins/net.bioclipse​.expression.tests/src/net/bioclipse/exp​ression/tests/CalculatorBaseTest.java:
09:35 CIA-15 bioclipse: [CalculatorBaseTest.java]
09:35 CIA-15 bioclipse: * added function 'log' since it's not native any more
09:37 CIA-15 bioclipse: carl_masak * r4081 /trunk/playground/plugins/net.bioclip​se.expression.tests/src/net/bioclipse​/expression/tests/FunctionsTest.java:
09:37 CIA-15 bioclipse: [FunctionsTest.java]
09:37 CIA-15 bioclipse: * corrected a few test assertions
09:44 CIA-15 bioclipse: jonalv * r4082 /trunk/playground/plugins/net.bioclipse.expres​sion.tests/src/net/bioclipse/expression/tests/ (CalculatorBaseTest.java FunctionsTest.java): Wrote tests for zero params, one param and multiparams functions
09:52 CIA-15 blueobelisk: egonw * r149 /foafdigger/trunk/src/foafdigger.in: Fail safely is no argument given
10:09 jbrefort joined #cdk
11:12 CIA-15 bioclipse: ospjuth * r4083 /trunk/playground/plugins/​net.bioclipse.biomoby.ui/: Initial import.
11:15 CIA-15 bioclipse: jonalv * r4084 /trunk/playground/plugins/net.bioclipse.expres​sion.tests/src/net/bioclipse/expression/tests/ (CalculatorBaseTest.java FunctionsTest.java): Wrote test for syntactical check off colonnotation ( test(A1:C3) should expand to all variables in the box...)
11:17 CIA-15 bioclipse: ospjuth * r4085 /trunk/playground/plugins/​net.bioclipse.biomoby.ui/ (46 files in 12 dirs): Refactored BioMoby to a plugin containing BioMoby (net.bioclipse.biomoby) and one for the Bioclipse BioMoby UI (net.bioclipse.biomoby.ui) to allow for separate updates.
11:20 CIA-15 bioclipse: ospjuth * r4086 /trunk/playground/plugins/net.bioclipse.biomoby/ (24 files in 11 dirs): Reduced plugin to only contain BioMoby and external BioMoby jars. Current version from: 2007-10-26
11:22 CIA-15 bioclipse: ospjuth * r4087 /trunk/playground/plugins/net​.bioclipse.biomoby.ui/icons/ (13 files in 2 dirs): Added missing icons
11:22 CIA-15 bioclipse: ospjuth * r4088 /trunk/playground/plugins/net.bioclips​e.biomoby.ui/icons/wizard/run_wiz.png: Added missing icon
11:33 CIA-15 bioclipse: jonalv * r4089 /trunk/playground/plugins/net.bioclip​se.expression.tests/src/net/bioclipse​/expression/tests/FunctionsTest.java: wrote test for expanding of colon notation
11:38 CIA-15 bioclipse: jonalv * r4090 /trunk/playground/plugins/net.biocli​pse.expression.tests/src/net/bioclip​se/expression/tests/SyntaxTest.java: Removed tests for unwanted functionality considering a few special functions
11:56 CIA-15 bioclipse: jonalv * r4091 /trunk/playground/plugins/net.bioclip​se.expression.tests/src/net/bioclipse​/expression/tests/FunctionsTest.java: wrote test for syntactical check of a point notation for variables
12:18 CIA-15 bioclipse: jonalv * r4092 /trunk/playground/plugins/net.bioclip​se.expression.tests/src/net/bioclipse​/expression/tests/FunctionsTest.java: Wrote tests for what the parser should do with point notation
12:18 CIA-15 bioclipse: ospjuth * r4093 /trunk/playground/plugins/net.bioclipse.biomoby/ (3 files in 2 dirs): Working on tests for biomoby meta.registry cache.
12:23 CIA-15 bioclipse: jonalv * r4094 /trunk/playground/plugins/net.bioclip​se.expression.tests/src/net/bioclipse​/expression/tests/VariablesTest.java: wrote test for adding variables to a created calculator
12:27 egonw joined #cdk
12:27 jonalv joined #cdk
12:27 rojasm joined #cdk
13:48 CIA-15 blueobelisk: egonw * r150 /foafdigger/trunk/ (INSTALL src/foafdigger.in): More digging: now does first order friends too, and puts things in a dir hierarcy
14:56 jonalv joined #cdk
17:58 CIA-15 jmol: hansonr * r8519 /trunk/Jmol/src/org/jmol/viewer/ (TransformManager.java TransformManager11.java): 11.3.39 possible fix
18:10 CIA-15 cdk: rajarshi * r9238 /trunk/cdk/src/org/openscience/cdk/t​est/modulesuites/MsmartsTests.java: Updated to only include tests for the JJTree based SMARTS packages - non-jjtree stuff will be removed at one point. As a result this actually runs the 800 or so tests we have for the smarts package
18:36 CIA-15 cdk: rajarshi * r9239 /trunk/cdk/src/META-INF/test-smarts.extrafiles: Added the extra files since SMARTS tests need some structures from SDFs
18:41 CIA-15 cdk: rajarshi * r9240 /trunk/cdk/src/org/openscience/cdk/test​/smiles/smarts/parser/ParserTest.java: Fixed an invalid SMARTS expression
19:14 egonw joined #cdk
19:15 CIA-15 cdk: rajarshi * r9241 /trunk/cdk/src/META-INF/test-smarts.extrafiles: added another data file entry
19:41 CIA-15 cdk: rajarshi * r9242 /trunk/cdk/src/org/openscience/cdk/test/​smiles/smarts/SMARTSQueryToolTest.java: Fixed a failing Junit test
19:45 CIA-15 cdk: rajarshi * r9243 /trunk/cdk/src/org/openscience/cd​k/config/data/cdk_atomtypes.xml: Added an atom type for a positively c harged iodine
20:11 CIA-15 cdk: rajarshi * r9244 /trunk/cdk/src/org/openscience/cd​k/config/data/cdk_atomtypes.xml: Fixed a typo
20:17 CIA-15 cdk: rajarshi * r9245 /trunk/cdk/src/org/openscience/cdk/test​/atomtype/CDKAtomTypeMatcherTest.java: Added support for the I+ atom type
20:18 CIA-15 cdk: rajarshi * r9246 /trunk/cdk/src/org/openscience/cdk​/atomtype/CDKAtomTypeMatcher.java: Added support for the I+ atom type
22:00 CIA-15 jmol: hansonr * r8520 /trunk/Jmol/src/org/jmol/ (3 files in 2 dirs): for Rolf -- antialias test
22:02 CIA-15 jmol: hansonr * r8521 /trunk/Jmol/src/org/jmol/viewer/Jmol.properties: for Rolf -- antialias test

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