Camelia, the Perl 6 bug

IRC log for #cdk, 2007-11-06

| Channels | #cdk index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
00:28 CIA-16 jmol: hansonr * r8571 /trunk/Jmol/src/org/jmol/viewer/ (Jmol.properties StateManager.java): version=11.3.42_dev # bug fix: set xxxCallback not allowed
03:42 CIA-16 cdk: rajarshi * r9379 /trunk/cdk/src/org/openscience/cdk/ (2 files in 2 dirs): Added a method to create a piperidine molecule and added a test to check the atom type detection in piperidine
03:58 CIA-16 cdk: rajarshi * r9380 /trunk/cdk/src/org/openscience/cd​k/templates/MoleculeFactory.java: Added a method to make oxane
04:14 Conrad joined #cdk
04:31 CIA-16 cdk: rajarshi * r9381 /trunk/cdk/src/org/openscience/cdk/test​/atomtype/CDKAtomTypeMatcherTest.java: Got back old formatting
04:32 CIA-16 cdk: rajarshi * r9382 /trunk/cdk/src/org/openscience/cdk/test​/atomtype/CDKAtomTypeMatcherTest.java: Added test cases for piperidine and oxane - bot the heteroatoms should be sp3 (?) but are detected as planar3
06:12 CIA-16 jmol: hansonr * r8572 /trunk/Jmol/src/org/jmol/viewer/ (Compiler.java Jmol.properties): 11.3.42 **** Jmol Embedded Script **** in comment and super-comment blocks
06:35 masak joined #cdk
07:13 jbrefort joined #cdk
08:13 thomas_ku joined #cdk
08:14 thomas_ku moin
08:30 jonalv joined #cdk
09:45 CIA-16 bioclipse: jonalv * r4158 /trunk/playground/plugins/net.bioclipse.u​sermanager/src/net/bioclipse/usermanager/ (IUserManagerListener.java UserManager.java): Renamed method for clarity
09:45 masak joined #cdk
10:16 jerome_ joined #cdk
10:17 jerome_ moin
10:21 CIA-16 bioclipse: jonalv * r4159 /trunk/playground/plugins/ (5 files in 4 dirs):
10:21 CIA-16 bioclipse: Added instantiation of the applicationContexts into Structuredb and changed bean
10:21 CIA-16 bioclipse: instantiation to be lazy in order to be able to change the database url and
10:21 CIA-16 bioclipse: stuff in the basicdatasource bean before connecting to database.
10:28 steinbeck joined #cdk
11:41 egonw joined #cdk
12:24 dleidert joined #cdk
12:28 CIA-16 cdk: egonw * r9383 /trunk/cdk/src/org/openscien​ce/cdk/config/data/html.xsl: Provide all atom type details in the HTML view
12:30 CIA-16 cdk: egonw * r9384 /trunk/cdk/src/org/openscien​ce/cdk/config/data/html.xsl: Added missing hierarchy
12:34 thomas_ku joined #cdk
14:08 CIA-16 bioclipse: ospjuth * r4160 /trunk/plugins/net.bioclipse.rhino/ (plugin.xml src/net/bioclipse/plugins/​bc_rhino/FileTools.java): Forgot to commit FileTools for scripting file access
15:43 CIA-16 bioclipse: carl_masak * r4161 /trunk/plugins/net.bioclipse.rhino/ (5 files in 4 dirs):
15:43 CIA-16 bioclipse: [net.bioclipse.rhino]
15:43 CIA-16 bioclipse: * js scripting console
16:02 CIA-16 cdk: egonw * r9385 /trunk/cdk/src/org/openscience/cdk​/atomtype/CDKAtomTypeMatcher.java: Fixed the bothAtomsAreSP2() method, and reused it for oxygen too now (which was a nice example of code *and* bug duplication :) (closes #1823584)
16:15 CIA-16 bioclipse: carl_masak * r4162 /trunk/plugins/net.bioclipse.rhino/src/net/biocli​pse/plugins/bc_rhino/views/RhinoConsoleView.java:
16:15 CIA-16 bioclipse: [RhinoConsoleView.java]
16:15 CIA-16 bioclipse: * added things TODO
16:24 CIA-16 bioclipse: carl_masak * r4163 /trunk/plugins/net.bioclipse.rhino/​src/net/bioclipse/plugins/bc_rhino/ (2 files in 2 dirs):
16:24 CIA-16 bioclipse: [RhinoConsoleView.java]
16:24 CIA-16 bioclipse: * separate js Context for this view so that variables
16:24 CIA-16 bioclipse:  survive
16:24 CIA-16 bioclipse: [RunRhinoScriptInThreadAction.java]
16:24 CIA-16 bioclipse: * fixed typo
16:50 CIA-16 bioclipse: jonalv * r4164 /trunk/playground/plugins/net.bioclipse.database/​src/net/bioclipse/database/IDataSourceType.java: Removed what I now think where unneeded methods from datasource interface
16:52 CIA-16 bioclipse: jonalv * r4165 /trunk/playground/plugins/net.bioclipse.hsqldb/ (3 files in 2 dirs):
16:52 CIA-16 bioclipse: Made HsqldbUtil into a singleton instead of using static methods
16:52 CIA-16 bioclipse: Switched way to start hsqldb from main method to Server object and have started attempt to be able to create more than one database on the server.
16:54 CIA-16 bioclipse: jonalv * r4166 /trunk/playground/plugins/ne​t.bioclipse.database.tests/: Initial import.
16:55 CIA-16 bioclipse: jonalv * r4167 /trunk/playground/plugins/ne​t.bioclipse.database.tests/ (11 files in 6 dirs): Initial import. Test for creating and connecting to database.
16:57 CIA-16 bioclipse: jonalv * r4168 /trunk/playground/plugins/ (4 files in 2 dirs): added support for multiple datasources and created method for creating new datasource
16:59 CIA-16 bioclipse: jonalv * r4169 /trunk/playground/plugins/net.​bioclipse.usermanager.tests/: svn:ignore on usermanager.dat (the user-data file)
17:25 CIA-16 jmol: hansonr * r8573 /trunk/Jmol/src/org/jmol/ (18 files in 3 dirs):
17:25 CIA-16 jmol: version=11.3.42_dev quaternion and memory leak
17:25 CIA-16 jmol: # bug fix: memory leak in merge -- models[i].modelSet causes modelSet to not finalize.
17:25 CIA-16 jmol: # bug fix: quaternion
17:49 jbrefort joined #cdk
17:50 CIA-16 joined #cdk
19:49 CIA-16 jmol: pimpimpim * r8574 /trunk/Jmol/src/org/jmol/ (3 files in 3 dirs):
19:49 CIA-16 jmol: # bug fix: small fix for povray cap at back side
19:49 CIA-16 jmol: # bug fix: overly long titles now again substringed in the popup menu.
21:09 dleidert joined #cdk
22:27 CIA-16 cdk: miguelrojasch * r9386 /trunk/cdk/src/org/openscience/cdk/ (10 files in 5 dirs): Different classes to handle molecular formula concept
22:59 CIA-16 cdk: rajarshi * r9387 /trunk/cdk/src/org/openscience/cdk/ (MolecularFormula.java interfaces/IMolecularFormula.java): Updated so that IMolecularFormula only refers to IMolecularFormula rather than MolecularFormula - it compiles now. Also updated the actual implementing class to clean up Javadocs and remove 1.4'isms
23:03 rguha joined #cdk
23:08 CIA-16 cdk: rajarshi * r9388 /trunk/cdk/src/org/openscience/c​dk/tools/IsotopeGenerator.java: Added cdk.module (putting it in standard since other MF stuff is in standard). Also fixed Javadocs and went to 1.5'isms

| Channels | #cdk index | Today | | Search | Google Search | Plain-Text | summary