Camelia, the Perl 6 bug

IRC log for #cdk, 2007-11-21

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All times shown according to UTC.

Time Nick Message
06:37 egonw_ joined #cdk
07:53 rguha joined #cdk
07:53 egonw_ hi rguha
07:53 rguha good morning
07:53 egonw_ good evening :)
07:54 rguha :)
07:54 egonw_ http://cdk.wiki.sourceforge.net/
07:54 rguha I saw your emails - I should point out that I had planned to update the code quality today
07:54 egonw_ front page copied
07:54 egonw_ yeah, that's fine...
07:54 rguha since I figured Nickolay did not not have svn write access
07:54 egonw_ but would have loved to see the branch approach used here...
07:54 egonw_ the code was not used, and broken really...
07:55 rguha ah, true
07:55 rguha i was in a hurry :-/
07:55 egonw_ now we still enter 'ugly' code into the main code base
07:55 egonw_ yeah, no worries
07:55 egonw_ I just have to say it...
07:55 egonw_ no one else will
07:55 rguha btw, do we want to move the wiki right now? Given the previous discussion on moving off SF.net?
07:55 egonw_ well, nothing happened since...
07:56 egonw_ and it's worrying me very much...
07:56 rguha what was the conclusion? Do we want to move?
07:56 egonw_ there is no backup
07:56 egonw_ server offline everey now and then...
07:56 egonw_ and difficult to maintain from about a 200km distance
07:56 rguha true
07:56 egonw_ no idea what the conclusion was
07:56 egonw_ I sleep better if I move it now
07:56 rguha aah OK
07:56 rguha well moving to an IU server is not a problem
07:57 egonw_ the other thing... is the main CDK website
07:57 egonw_ that needs to move too...
07:57 rguha I will just have to see the protocol to get you/Chrisoph logins
07:57 egonw_ that's Plone, so even trickier
07:58 rguha hmm
07:59 rguha well I'll look into this after Thanksgiving break
07:59 rguha if it's not a big problem, we can just tar/untar verything onto the IU machine
07:59 egonw_ yeah...
07:59 egonw_ remember I told you that I would send you a .tar?
07:59 egonw_ well... the one I had, did not actually contain the HTML pages...
08:00 rguha :)
08:00 egonw_ just lots of Plone crap around it :(
08:00 rguha plain old HTML is still the most reliable thing!
08:00 egonw_ so, still have no back up :(
08:00 egonw_ yes
08:03 rguha well, I have to catch a plane
08:04 rguha I'll committ my edits for the AlogP stuff later today
08:04 egonw_ http://cdk.wiki.sourceforge.net/space/changes
08:04 egonw_ OK,
08:04 egonw_ thanx for looking after the code
08:05 rguha no problem
08:13 masak joined #cdk
08:23 olas joined #cdk
09:23 jonalv joined #cdk
09:57 CIA-16 bioclipse: ospjuth * r4308 /branches/bioclipse2/chemoinf​ormatics/net.bioclipse.jmol/ (7 files in 5 dirs):
09:57 CIA-16 bioclipse: Added scripting functionality for Jmol by hooking it into Js-console via the scripting EP. Can't write Jmol status messages (like error reports) to console yet, awaiting patch from masak.
09:57 CIA-16 bioclipse: Call jmol scripts in the following way: jmol.run("spin on")
10:44 CIA-16 cdk: miguelrojasch * r9472 /branches/miguelrojasch/mf​/src/org/openscience/cdk/ (5 files in 2 dirs): added test for formula package
11:03 CIA-16 bioclipse: egonw * r4309 /branches/bioclipse2/chemoin​formatics/net.bioclipse.cdk/ (.classpath META-INF/MANIFEST.MF): Exported vecmath so that cdk.ui can use it
11:35 sneumann joined #cdk
13:01 jonalv joined #cdk
13:38 CIA-16 bioclipse: egonw * r4310 /branches/bioclipse2/chemoinformatics/ (3 files in 3 dirs): OK, added lots of crap actually used by cdk.ui :( Ola: I know you don't like plugin explosions... but it would really be better to put all these third party libs in separate plugins...
14:07 edrin joined #cdk
14:09 CIA-16 cdk: miguelrojasch * r9473 /branches/miguelrojasch/mf​/src/org/openscience/cdk/ (4 files in 2 dirs): added Manipulator to the formula package
14:19 masak joined #cdk
14:23 thomas_ku joined #cdk
14:49 CIA-16 bioclipse: carl_masak * r4311 /branches/bioclipse2/tools/plugins/: Initial import.
14:49 CIA-16 bioclipse: carl_masak * r4312 /branches/bioclipse2/tools/p​lugins/net.bioclipse.junit/: Initial import.
14:50 CIA-16 bioclipse: carl_masak * r4313 /branches/bioclipse2/tools/p​lugins/net.bioclipse.junit/ (8 files in 4 dirs): Initial import.
15:03 CIA-16 bioclipse: egonw * r4314 /branches/bioclipse2/tools/p​lugins/net.bioclipse.junit/: Removed plugin: use org.junit4 that comes with Eclipse instead
15:06 CIA-16 bioclipse: egonw * r4315 /branches/bioclipse2/core/plug​ins/net.bioclipse.core.tests/ (.classpath META-INF/MANIFEST.MF): Added missing dep on JUnit4
15:15 CIA-16 bioclipse: carl_masak * r4316 /branches/bioclipse2/core/p​lugins/net.bioclipse.core/ (3 files in 2 dirs):
15:15 CIA-16 bioclipse: [net.bioclipse.core]
15:15 CIA-16 bioclipse: * renamed RhinoConsoleView -> JsConsoleView
15:20 CIA-16 bioclipse: jonalv * r4317 /branches/bioclipse2/bioinformatics/plugi​ns/net.bioclipse.biojava.business.tests/ (4 files in 3 dirs): added junit4 dep and an empty test for jfeature investigation in biojava plugin
15:22 CIA-16 bioclipse: carl_masak * r4318 /branches/bioclipse2/core/plugins/n​et.bioclipse.core/src/net/bioclipse​/core/scripting/JsEnvironment.java:
15:22 CIA-16 bioclipse: [JsEnvironment.java]
15:22 CIA-16 bioclipse: * now catches syntax errors during evaluation
15:46 CIA-16 bioclipse: carl_masak * r4319 /branches/bioclipse2/core/plugins/n​et.bioclipse.core/src/net/bioclipse​/core/scripting/JsEnvironment.java:
15:46 CIA-16 bioclipse: [JsEnvironment.java]
15:46 CIA-16 bioclipse: * log and return if registry does not exist
15:46 CIA-16 bioclipse: * this makes test pass again
16:32 jbrefort joined #cdk
16:39 jonalv joined #cdk
17:19 CIA-16 blueobelisk: cjames53 * r165 /smiles-spec/trunk/ (ChangeLog open-smiles-7-references.html):
17:19 CIA-16 blueobelisk: open-smiles-7-references.html
17:19 CIA-16 blueobelisk:  Changed link to Marvin.
18:16 carsten joined #cdk
18:28 CIA-16 jmol: hansonr * r8643 /trunk/Jmol/src/org/jmol/ (9 files in 4 dirs):
18:28 CIA-16 jmol: version=11.3.46_dev # new feature: set isosurfacePropertySmoothing # default TRUE
18:28 CIA-16 jmol: # smooths the coloring for isosurface ... map property ...
18:32 CIA-16 jmol: hansonr * r8644 /trunk/Jmol/src/org/jmol/jv​xl/readers/Parameters.java:
18:32 CIA-16 jmol: version=11.3.46_dev # new feature: set isosurfacePropertySmoothing # default TRUE
18:32 CIA-16 jmol: # smooths the coloring for isosurface ... map property ...
19:50 CIA-16 jmol: hansonr * r8645 /trunk/Jmol/src/org/jmol/viewer/Jmol.properties: 11.3.46 VERSION
21:28 CIA-16 jmol: hansonr * r8647 /trunk/Jmol/src/org/jmol/ (4 files in 3 dirs): version=11.3.46 # new feature: calculate surface {atomExpression}
22:32 edrin joined #cdk
22:51 CIA-16 cdk: rajarshi * r9474 /trunk/cdk/src/org/openscience/cdk/test/qsar/d​escriptors/molecular/ALOGPDescriptorTest.java: Cleaned up test code for the ALOGP descriptor. Still missing a value

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