Camelia, the Perl 6 bug

IRC log for #cdk, 2007-12-18

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All times shown according to UTC.

Time Nick Message
02:52 CIA-17 joined #cdk
05:17 CIA-17 jmol: nicove * r8810 /trunk/Jmol/src/org/jmol/viewer/Jmol.properties: Version
06:24 jbrefort joined #cdk
08:30 steinbeck joined #cdk
08:40 carsten joined #cdk
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08:46 thomas_ku joined #cdk
08:47 thomas_ku moin
09:00 carsten moin moin
09:11 masak joined #cdk
09:17 egonw OK, patch 8789 is on the branch...
09:17 egonw Analyzing rev 8789
09:17 egonw Mmm... migth still take some will for the bug count analysis on the cdk-1.0.x/ branch to finish... :)
09:33 CIA-17 bioclipse: carl_masak * r4515 /branches/bioclipse2/core/plugins/ (8 files in 2 dirs):
09:33 CIA-17 bioclipse: [net.bioclipse.core]
09:33 CIA-17 bioclipse: * Logger is now ConsoleEchoer
09:33 CIA-17 bioclipse: * LogEvent is now EchoEvent
09:33 CIA-17 bioclipse: * LoggerListener is now EchoListener
09:33 CIA-17 bioclipse: [net.bioclipse.ui.JsConsoleView]
09:33 CIA-17 bioclipse: * chased above changes
09:33 masak you're lucky to have a working CIA bot
09:33 masak #bioclipse's has bitten the bag
09:38 CIA-17 bioclipse: ospjuth * r4516 /branches/bioclipse2/misc/:
09:39 olas joined #cdk
09:39 CIA-17 bioclipse: ospjuth * r4517 /branches/bioclipse2/misc/net.bioclipse.analysis/: Initial import.
09:39 CIA-17 bioclipse: carl_masak * r4518 /branches/bioclipse2/core/plugins/ (2 files in 2 dirs):
09:39 CIA-17 bioclipse: [net.bioclipse.core.ConsoleEchoer]
09:39 CIA-17 bioclipse: * fireLogEvent is now called echo
09:39 CIA-17 bioclipse: [net.bioclipse.ui.views.JsConsoleView]
09:39 CIA-17 bioclipse: * chased above change
09:40 CIA-17 bioclipse: ospjuth * r4519 /branches/bioclipse2/misc/net.bioclipse.analysis/ (10 files in 6 dirs): Initial import. Will contain matrix editor and charts.
09:46 CIA-17 bioclipse: egonw * r4520 /trunk/plugins/net.bioclipse.cdk.ui/plugin.xml: Disabled SD file support; it's broken and unsupported
09:47 CIA-17 bioclipse: egonw * r4521 /trunk/plugins/net.bioclipse.cdk.ui/plugin.xml: Disabled 3D coord generation action; it only works for non-ring molecules, conflicts with the JCP editor
09:49 CIA-17 bioclipse: egonw * r4522 /trunk/plugins/net.bioclipse.tutorial.chemoi​nformatics/cheatsheets/chemoinfo/smiles.xml: Removed reference for disables 3D coord generation
10:00 CIA-17 bioclipse: ospjuth * r4523 /branches/bioclipse2/misc/net.bioclipse.analysis/ (10 files in 5 dirs): Added skeleton for MatrixEditor in bc2.
10:07 CIA-17 bioclipse: ospjuth * r4524 /branches/bioclipse2/misc/net.bioclipse.analysis/ (2 files in 2 dirs): Removed dep on forms
10:19 CIA-17 bioclipse: carl_masak * r4525 /branches/bioclipse2/core/plugins/n​et.bioclipse.scripting/plugin.xml:
10:19 CIA-17 bioclipse: [plugin.xml]
10:19 CIA-17 bioclipse: * updated antiquated file path
10:28 CIA-17 bioclipse: egonw * r4526 /trunk/ (2 files in 2 dirs): Not for 1.2.0.
10:30 CIA-17 bioclipse: egonw * r4527 /trunk/ (2 files in 2 dirs): Not for 1.2.0.
10:30 CIA-17 bioclipse: egonw * r4528 /trunk/ (2 files in 2 dirs): Not for 1.2.0.
10:30 CIA-17 bioclipse: egonw * r4529 /trunk/ (2 files in 2 dirs): For 1.2.0.
10:31 CIA-17 bioclipse: egonw * r4530 /trunk/ (2 files in 2 dirs): For 1.2.0.
10:40 olas joined #cdk
10:40 masak joined #cdk
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10:40 steinbeck joined #cdk
10:40 CIA-17 joined #cdk
10:40 egonw joined #cdk
10:40 rojasm joined #cdk
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10:54 EskilA joined #cdk
11:04 CIA-17 bioclipse: egonw * r4531 /trunk/features/net.bioclips​e.qsar-feature/feature.xml: Added three plugins for the QSAR feature
11:47 CIA-17 bioclipse: egonw * r4532 /trunk/ (2 files in 2 dirs): Not for 1.2.0.
11:49 CIA-17 bioclipse: egonw * r4533 /trunk/features/net.bioclipse.spe​ctrum-feature/feature.properties: MzData is not part of 1.2.0
12:06 CIA-17 bioclipse: egonw * r4535 /trunk/plugins/net.bioclipse.tutorial​.qsar/cheatsheets/chemoinfo/qsar.xml: Fixed layout and added step for making a scatter plot
12:30 olas joined #cdk
12:31 masak joined #cdk
12:33 CIA-17 bioclipse: updatebjarni * r4536 /branches/bioclipse2/core/plugins/n​et.bioclipse.ui/src/net/bioclipse/u​i/views/ScriptingConsoleView.java: Redraws window so all output appears as it should.
12:36 jonalv joined #cdk
12:55 steinbeck left #cdk
13:04 CIA-17 bioclipse: ospjuth * r4537 /trunk/plugins/net.bioclipse.joelib/ (.classpath META-INF/MANIFEST.MF build.properties): Updated manifest for 1.2.0
13:11 dleidert joined #cdk
13:37 CIA-17 bioclipse: biocoder * r4538 /trunk/plugins/net.bioclipse.statistics/src/​net/bioclipse/editors/MatrixGridEditor.java: Fixed a bug where cell editing artifacts were not removed.
13:52 CIA-17 bioclipse: egonw * r4539 /trunk/plugins/net.bioclipse.descriptor/src/net​/bioclipse/jobs/DescriptorCalculationJob.java: Fixed problem with descriptor calculation with more than one provider. The results of the second provider would overwrite that of the first provider
14:18 CIA-17 bioclipse: carl_masak * r4540 /branches/bioclipse2/core/plugins/n​et.bioclipse.ui/src/net/bioclipse/u​i/views/ScriptingConsoleView.java:
14:18 CIA-17 bioclipse: [ScriptingConsoleView.java]
14:18 CIA-17 bioclipse: * empty commands are not saved to command history
14:43 CIA-17 bioclipse: egonw * r4541 /trunk/plugins/net.bioclipse.cdk.descriptor/src/ne​t/bioclipse/extensions/CDKDescriptorProvider.java: Don't dump stacktrace; ensure length == 1
15:11 dleidert egonw: ping?
15:12 egonw dleidert: pong
15:12 dleidert I have a question: you are mentioned to be the package maintainer for bodr
15:13 egonw am I?
15:13 egonw nice :)
15:13 dleidert now in debichem we decided to use the list address for the maintainer field and move individuals into the Uploaders field
15:13 dleidert JFTR: yes, you are listed in bodr in the Maintainers field
15:13 dleidert yesterday I set the team address as maintainer for bodr and moved your name to the Uploaders field
15:13 egonw yes, the blue-obelisk ML in there should be fine
15:13 dleidert question: Ok for you?
15:14 egonw yes, though I'm not an uploader...
15:14 dleidert Uploader does not mean, that all those people can upload the package ... it just means, that all these people work on the package
15:15 dleidert means: they can build the package (their name can be found under a changelog entry)
15:15 egonw ok, perfect
15:15 dleidert If the name under a changelog entry differ from those found in Maintainer and Uploaders, it called an NMU - Non Maintainer Upload
15:15 dleidert s/it/it is
15:16 CIA-17 bioclipse: egonw * r4542 /trunk/plugins/net.bioclipse.statistics/sr​c/net/bioclipse/model/MatrixResource.java: QSAR seems to create bad output now and then, some miscount, the labels should be trusted. This fix removes the stacktrace, and will just add the columns that have a label
15:46 thomas_ku joined #cdk
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15:56 CIA-17 bioclipse: updatebjarni * r4543 /branches/bioclipse2/core/plugins/n​et.bioclipse.scripting/src/net/bioc​lipse/scripting/JsEnvironment.java: New function evalToObject to support backtick substitution for R.
15:59 CIA-17 bioclipse: updatebjarni * r4544 /branches/bioclipse2/core/plugins/net.b​ioclipse.r/src/net/bioclipse/r/R.java: Some iffy support for receiving objects by backtick substitution.
16:03 CIA-17 bioclipse: updatebjarni * r4545 /branches/bioclipse2/core/plugins/net.bioclipse.u​i/src/net/bioclipse/ui/views/JsConsoleView.java: Some backtick substitution support for R integration.
16:31 CIA-17 bioclipse: biocoder * r4546 /trunk/plugins/net.bioclipse.statistics/src/​net/bioclipse/editors/MatrixGridEditor.java: corrected selections
16:32 CIA-17 bioclipse: biocoder * r4547 /trunk/plugins/net.bioclips​e.chart/src/net/bioclipse/ (4 files in 3 dirs): fixed selections
16:54 CIA-17 bioclipse: carl_masak * r4548 /branches/bioclipse2/core/plugins/ (13 files in 6 dirs):
16:54 CIA-17 bioclipse: [net.bioclipse.scripting]
16:54 CIA-17 bioclipse: [net.bioclipse.ui]
16:54 CIA-17 bioclipse: * added Ruby scripting support
17:23 CIA-17 joined #cdk
17:36 thomas_ku joined #cdk
17:48 jbrefort joined #cdk
17:52 dleidert_away joined #cdk
18:27 egonw joined #cdk
19:04 CIA-17 cdk: egonw * r9629 /branches/egonw/explicithydrogens/.project: Localized project name
19:04 CIA-17 cdk: egonw * r9630 /branches/egonw/explicithydro​gens/src/org/openscience/cdk/ (2 files in 2 dirs): Implemented requirement for explicit hydrogens; bit dirty, as the test is at the end, but that does make things clearer
19:07 CIA-17 cdk: egonw * r9631 /branches/egonw/explicithydro​gens/src/org/openscience/cdk/ (2 files in 2 dirs): Better names
19:20 CIA-17 cdk: egonw * r9632 /trunk/cdk/src/org/openscience/cdk/ (2 files in 2 dirs): Applied patches 9630 and 9631: add a mode to the CDK atom type perceiver to require explicit hydrogens
19:21 CIA-17 cdk: egonw * r9633 /branches/egonw/explicithydrogens/: Closing branch; was easier to do than anticipated. Patch applied as r9632.
19:35 CIA-17 cdk: egonw * r9634 /trunk/cdk/src/org/openscience/cdk/rea​ction/type/BreakingBondReaction.java: Require explicit hydrogens in atom typing
21:12 jbrefort joined #cdk
22:37 CIA-17 jmol: hansonr * r8811 /trunk/Jmol/src/ (8 files in 4 dirs):
22:37 CIA-17 jmol: version=11.3.61_dev
22:37 CIA-17 jmol: # bug fix: memory leak in applet due to mouse/hoverwatcher listeners
22:37 CIA-17 jmol: # bug fix: applets not self-destroying when window containing them close
22:37 CIA-17 jmol: # bug fix: rotate commands not sent to other applets when set syncScript if OFF

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