Camelia, the Perl 6 bug

IRC log for #cdk, 2007-12-31

| Channels | #cdk index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
00:21 CIA-17 cdk: rajarshi * r9747 /trunk/cdk/src/org/openscience/cdk/ (3 files in 3 dirs): Updated the coverage tester for the standard module to use annotations. Started on update of the standard classes. Since this committed, a ton of errors will show up - will be fixed progresively
00:37 CIA-17 cdk: rajarshi * r9748 /trunk/cdk/src/org/openscience/cdk/ (4 files in 2 dirs): Updated to include test class/method annotations
01:30 CIA-17 cdk: rajarshi * r9749 /trunk/cdk/src/org/openscience/cdk/ (4 files in 4 dirs): Updated to include test class/method annotations
04:50 CIA-17 jmol: hansonr * r8877 /trunk/Jmol/src/org/jmol/ (12 files in 4 dirs):
04:50 CIA-17 jmol: version=11.3.67_dev
04:50 CIA-17 jmol: # bug fix: tainted occupancy not saved in state
04:50 CIA-17 jmol: # bug fix: biopolymers have wrong wing vectors (from 11.3.62)
04:50 CIA-17 jmol: # bug fix: restore of state does not reset user-defined atom properties
04:50 CIA-17 jmol: # code: refactoring Atom and AtomCollection
04:53 CIA-17 jmol: hansonr * r8878 /branches/v11_4/:
04:54 CIA-17 jmol: hansonr * r8879 /branches/v11_4/:
05:04 CIA-17 jmol: hansonr * r8880 /trunk/Jmol/src/org/jmol/viewer/Jmol.properties: 11.3.67/11.4.0 VERSION
09:15 carsten joined #cdk
09:41 CIA-17 cdk: egonw * r9750 /trunk/cdk/src/org/openscience/cdk/te​st/modulesuites/MstandardTests.java: Fixed compile errors
09:54 egonw joined #cdk
10:00 jbrefort joined #cdk
10:08 Topic for #cdkis now The Chemistry Development Kit (http://cdk.sf.net) | JUnit: 5037 test, 136 fails + 528 errors (7.6%) | CDK 1.0.x TODO: see http://cdk.sf.net/wiki/ | Logs at http://moritz.faui2k3.org/​irclog/out.pl?channel=cdk
10:08 Topic for #cdkis now The Chemistry Development Kit (http://cdk.sf.net) | JUnit: 5037 test, 136 fails + 528 errors (7.6%) | CDK 1.0.x TODO: see http://cdk.sf.net/wiki/ | Logs at http://moritz.faui2k3.org/​irclog/out.pl?channel=cdk
10:32 CIA-17 blueobelisk: egonw * r232 /cb/trunk/get_feeds.pl: Provide some means to easily get the URL of a failing feed
10:33 CIA-17 blueobelisk: egonw * r233 /cb/trunk/parse_feed.py: Easier debugging (added delay) and don't try to parse the new '.url' files
10:57 edrin joined #cdk
11:25 jpansanel moin
11:25 edrin hi jpansanel
11:26 jpansanel hi edrin
11:36 egonw hi jpansanel
11:38 CIA-17 cdk: egonw * r9751 /trunk/cdk/src/org/openscienc​e/cdk/test/qsar/descriptors/ (2 files in 2 dirs): Removed methods available from super
11:46 jpansanel hi egonw
12:19 CIA-17 cdk: egonw * r9752 /trunk/cdk/src/org/openscienc​e/cdk/test/qsar/descriptors/ (44 files in 3 dirs):
12:19 CIA-17 cdk: Added a more efficient helper method to set the super.descriptor (updated the
12:19 CIA-17 cdk: JavaDoc with the example code), which also checks for reasonable input. This
12:19 CIA-17 cdk: fixes a NPE problem because both DescriptorTest and
12:19 CIA-17 cdk: I[Molecular|Atomic]DescriptorTest had a descriptor field
12:23 CIA-17 cdk: egonw * r9753 /trunk/cdk/src/org/openscience/c​dk/test/qsar/descriptors/atomic/ (25 files): Added missing setUp methods
12:51 edrin joined #cdk
12:51 egonw joined #cdk
12:51 jbrefort joined #cdk
12:51 CIA-17 joined #cdk
12:51 cpyang joined #cdk
12:51 jpansanel joined #cdk
12:51 Conrad joined #cdk
13:02 CIA-17 blueobelisk: egonw * r234 /cb/trunk/handle_acs.pl: Handle the new paper preview page of the ACS
13:03 CIA-17 blueobelisk: egonw * r235 /cb/trunk/update_posts.pl: Now has parameters to indicate which blogs should be updated
13:04 CIA-17 blueobelisk: egonw * r236 /cb/trunk/pipeline.pl: Now uses the min max parameters of update_posts.pl
13:39 CIA-17 cdk: egonw * r9754 /trunk/cdk/src/org/openscienc​e/cdk/qsar/IDescriptor.java: Extended JavaDoc (closes #1860432)
13:41 edr1n joined #cdk
13:46 CIA-17 cdk: egonw * r9755 /trunk/cdk/src/org/openscience/cdk/qsar/ (3 files): Fixed copyright line; add details on descriptor length depending on parameter values
13:53 Topic for #cdkis now The Chemistry Development Kit (http://cdk.sf.net) | JUnit: 5037 test, 125 fails + 114 errors (4.7%) | CDK 1.0.x TODO: see http://cdk.sf.net/wiki/ | Logs at http://moritz.faui2k3.org/​irclog/out.pl?channel=cdk
13:53 Topic for #cdkis now The Chemistry Development Kit (http://cdk.sf.net) | JUnit: 5037 test, 125 fails + 114 errors (4.7%) | CDK 1.0.x TODO: see http://cdk.sf.net/wiki/ | Logs at http://moritz.faui2k3.org/​irclog/out.pl?channel=cdk
14:02 edrin joined #cdk
14:04 CIA-17 cdk: egonw * r9756 /trunk/cdk/ (10 files in 2 dirs): Upgraded PMD to 4.1 in trunk/ (closes #1860716)
14:04 CIA-17 jmol: hansonr * r8881 /trunk/Jmol/src/org/jmol/ (6 files in 4 dirs):
14:04 CIA-17 jmol: version=11.3.67
14:04 CIA-17 jmol: # bug fix: wing vectors for biopolymers
14:04 CIA-17 jmol: # not containing O improperly drawn for sheets
14:04 CIA-17 jmol: # and, in the case of set traceAlpha TRUE (the default), helixes
14:04 CIA-17 jmol: # bug fix: translateSelected/rotateSelected does not move cartoons
14:07 CIA-17 jmol: hansonr * r8882 /branches/v11_4/Jmol/src/org/jmol/ (6 files in 4 dirs):
14:07 CIA-17 jmol: version=11.4.0
14:07 CIA-17 jmol: # bug fix: wing vectors for biopolymers
14:07 CIA-17 jmol: # not containing O improperly drawn for sheets
14:07 CIA-17 jmol: # and, in the case of set traceAlpha TRUE (the default), helixes
14:07 CIA-17 jmol: # bug fix: translateSelected/rotateSelected does not move cartoons
14:19 CIA-17 jmol: hansonr * r8883 /trunk/Jmol/src/org/jmol/mo​delsetbio/BioPolymer.java:
14:19 CIA-17 jmol: hansonr * r8884 /branches/v11_4/Jmol/src/org/jm​ol/modelsetbio/BioPolymer.java:
15:01 edr1n joined #cdk
15:58 edrin joined #cdk
15:59 CIA-17 bioclipse: edrin_t * r4588 /trunk/xws-client/src/net/bioclipse/xws/client/ (12 files in 5 dirs): ...
16:00 CIA-17 bioclipse: edrin_t * r4589 /trunk/xws-component/src/net/bioclipse/xws/ (7 files in 3 dirs): ... blah blah
16:36 CIA-17 jmol: hansonr * r8885 /branches/v11_4/Jmol/src/org/jmol/ (3 files in 2 dirs):
16:36 CIA-17 jmol: version=11.3.67
16:36 CIA-17 jmol: # code: inefficiencies in Quaternion code
16:46 CIA-17 cdk: rajarshi * r9757 /trunk/cdk/src/org/openscience/cdk/ (5 files in 3 dirs): Updated to include test class/method annotations
17:57 CIA-17 cdk: rajarshi * r9758 /trunk/cdk/src/org/openscience/cdk/tools/m​anipulator/AtomContainerManipulator.java: Minor update to use parametrized container types
18:01 CIA-17 cdk: rajarshi * r9759 /trunk/cdk/src/org/openscience/cdk/tool​s/manipulator/ReactionManipulator.java: Minor update to use parametrized container types
18:10 CIA-17 cdk: rajarshi * r9760 /trunk/cdk/src/org/openscience/cdk/ (3 files in 3 dirs): Updated for the test method/class annotations
18:13 CIA-17 cdk: rajarshi * r9761 /trunk/cdk/src/org/openscie​nce/cdk/tools/manipulator/ (3 files): Cleaned up some of the code to use properly typed containers
18:53 CIA-17 jmol: hansonr * r8886 /trunk/Jmol/src/org/jmol/ (4 files in 2 dirs): version=11.5.1 # bug fix: quaternion for nucleic acids
18:56 CIA-17 jmol: hansonr * r8887 /branches/v11_4/Jmol/src/org/jmol/ (4 files in 2 dirs): # bug fix: quaternion for nucleic acids
20:47 CIA-17 cdk: rajarshi * r9762 /trunk/cdk/src/org/openscience/cdk​/test/CoverageAnnotationTest.java: Updated to ignore the toString() method of a class
20:48 CIA-17 cdk: rajarshi * r9763 /trunk/cdk/src/org/openscience/cdk/ (5 files in 3 dirs): Updated to Junit 4, added test method/class annotations, add missing tests
21:02 CIA-17 jmol: hansonr * r8888 /trunk/Jmol/test/org/jmol/adapter/s​marter/TestSmarterJmolAdapter.java:
21:02 CIA-17 jmol: hansonr * r8889 /branches/v11_4/Jmol/test/org/jmol/adapt​er/smarter/TestSmarterJmolAdapter.java:
21:15 CIA-17 cdk: rajarshi * r9764 /trunk/cdk/src/org/openscience/cdk/ (9 files in 3 dirs): Updated to Junit 4, added test method/class annotations
21:24 CIA-17 cdk: rajarshi * r9765 /trunk/cdk/src/org/openscience/cdk/ (5 files in 3 dirs): Updated to Junit 4, added test method/class annotations
21:33 CIA-17 cdk: rajarshi * r9766 /trunk/cdk/src/org/openscience/cdk/ (7 files in 5 dirs): Updated to Junit 4, added test method/class annotations
21:52 CIA-17 cdk: rajarshi * r9767 /trunk/cdk/src/org/openscience/cdk/ (3 files in 3 dirs): Updated to Junit 4, added test method/class annotations
22:06 CIA-17 cdk: rajarshi * r9768 /trunk/cdk/src/org/openscience/cdk/ (9 files in 3 dirs): Updated to Junit 4, added test method/class annotations
22:07 CIA-17 cdk: rajarshi * r9769 /trunk/cdk/src/org/opensci​ence/cdk/test/fingerprint/ (FingerprinterTest.java GraphOnlyFingerprinterTest.java): Fixed typos preventing compilation

| Channels | #cdk index | Today | | Search | Google Search | Plain-Text | summary