Camelia, the Perl 6 bug

IRC log for #cdk, 2008-02-01

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All times shown according to UTC.

Time Nick Message
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09:00 egonw_ moin
09:00 egonw_ rojasm: I've finished the merge... note that this doesn't currently work:
09:00 egonw_ ant -Dmodule=reaction test-module
09:14 olas joined #cdk
09:18 egonw_ hi olas
09:19 olas hi egonw_
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12:08 CIA-18 cdk: egonw * r9984 /trunk/cdk/src/org/openscience​/cdk/tools/HydrogenAdder.java: Removed unused and obsolete class
12:08 egonw_ 16 to go :)
12:35 CIA-18 bioclipse: ospjuth * r4874 /branches/bioclipse2/core/p​lugins/net.bioclipse.core/ (10 files in 3 dirs): Added convenience methods for Jobs in Bioclipse2.
12:36 olas left #cdk
12:37 CIA-18 bioclipse: ospjuth * r4875 /branches/bioclipse2/bioinformatics​/plugins/net.bioclipse.biojava.ui/ (4 files in 2 dirs): Added 2 long running operations to demonstrate failing and succeeding jobs. Right-click on an IAASequence to execute (e.g. expand sequence2.fasta in sampleData/sequences).
13:24 CIA-18 bioclipse: ospjuth * r4876 /branches/bioclipse2/bioinformatics/plug​ins/net.bioclipse.biojava.ui/plugin.xml:
13:24 CIA-18 bioclipse: Solved how actions can be visible/enabled for certain contentTypes. Example
13:24 CIA-18 bioclipse: implementation: Long running operations only available when clicked a File which
13:24 CIA-18 bioclipse: is considered a sequence (with SequenceContentType that matches the
13:24 CIA-18 bioclipse: file-extensions).
13:27 CIA-18 cdk: egonw * r9985 /trunk/cdk/src/org/openscience/cdk/ (31 files in 15 dirs): Bug administration: synched with CDK BTS
13:54 MarkFiers joined #cdk
13:54 MarkFiers Egon, jij daar?
13:54 egonw_ hi MarkFiers
13:54 MarkFiers Hee
13:54 egonw_ EN is main language here...
13:54 MarkFiers thought so..
13:55 egonw_ this the Chemistry Development Kit channel
13:55 egonw_ there is also #bioclipse
13:55 MarkFiers ok
13:55 MarkFiers want to register tentative datatypes for biomoby service
13:55 MarkFiers and, to not have to change names too often,
13:55 egonw_ there should/might be Metabolite in there...
13:55 MarkFiers are you ok with somtehitng as MSRawCdfUri
13:56 egonw_ registered by me
13:56 MarkFiers need one for cdfs right now
13:56 egonw_ which might be useful for the output (ListOf..)
13:56 egonw_ right
13:56 MarkFiers ok
13:56 MarkFiers will look at metabolite
13:56 egonw_ MSRawCdfUri might sound fine
13:56 MarkFiers but, for input:
13:56 egonw_ but we also need the ListOf equivalent
13:56 MarkFiers Good... Will have one string, being the uri... I'm setting up ftp, for the time being.
13:56 egonw_ for multi sample alignment
13:57 MarkFiers ListOfs are standard, i think, in biomoby.. so we can do that.
13:57 egonw_ good
13:57 MarkFiers ok, than I can plod ahead... I'm starting to like dashboard/moses
13:57 egonw_ funny... I here your voice when you say something here online :)
13:57 MarkFiers at least for perl
13:57 MarkFiers :)
13:57 egonw_ excellent
13:58 egonw_ MarkFiers: might you join #bioclipse for a sec?
13:58 MarkFiers ok
13:58 egonw_ then I'll introduce you to olas, who has been working on BioMoby integration in Bioclipse
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16:27 CIA-18 cdk: egonw * r9986 /branches/egonw/ifragment/: Created a branch to move IFragmentAtom into the interface module (see bug 1872765).
16:30 egonw_ 14
16:33 CIA-18 cdk: egonw * r9987 /branches/egonw/ifragment/.project: Customized to keep Eclipse happy...
16:34 CIA-18 cdk: egonw * r9988 /trunk/cdk/.project: Reset to 'cdk'. That bit was not supposed to be merged too when I merged the mf/ branch
17:05 CIA-18 cdk: egonw * r9989 /branches/egonw/ifragment/src/org/openscience/cdk/ (7 files in 4 dirs): OK, moved IFragmentAtom to the interfaces module; now I have to ensure no new tests fail...
17:12 CIA-18 cdk: egonw * r9990 /trunk/cdk/src/org/openscience/cdk/l​ibio/cml/MDMoleculeCustomizer.java: Fixed location of cdk.set line...
17:12 egonw_ 10 to go
17:13 egonw_ of course the 10.000th commit will be this weekend, when no one is around :)
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21:18 CIA-18 jmol: aherraez * r8943 /trunk/Jmol-web/source/doc/ (13 files in 6 dirs): website update: rewrite some pages, more help for novice users

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