Camelia, the Perl 6 bug

IRC log for #cdk, 2008-02-06

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All times shown according to UTC.

Time Nick Message
03:09 CIA-19 jmol: hansonr * r8963 /trunk/Jmol/src/org/ (4 files in 3 dirs): (log message trimmed)
03:09 CIA-19 jmol: version=11.5.5_dev # new feature -- syncCallback
03:09 CIA-19 jmol: # intercepts messages that would otherwise go to applets for syncing
03:09 CIA-19 jmol: # when syncCallback is set to a JavaScript function name, that function
03:09 CIA-19 jmol: # intercepts the sync message and can pass it on (by returning it),
03:09 CIA-19 jmol: # consume it (by returning an empty string ""), or modify it as desired.
03:09 CIA-19 jmol: # this allows, for example, monitoring of orientation information so that
05:20 jbrefort joined #cdk
06:41 rojasm joined #cdk
07:58 egonw joined #cdk
07:59 rojasm moin egonw
08:00 egonw hi rojasm
08:00 egonw I have a busy day (at home) today...
08:00 rojasm :)
08:00 egonw just booted my email client
08:01 egonw haven't looked at cmlspect since your reply on that
08:01 rojasm no problem
08:02 rojasm in 30 minuts we have seminar. You said that you would be prepared to give a seminar, right?
08:02 egonw yes
08:02 rojasm about Metware and CMS
08:02 egonw CMS?
08:02 egonw MetWare sure...
08:02 rojasm ok
08:02 egonw maybe also a bit about MetFlow...
08:02 egonw what is CMS?
08:03 rojasm content managent system. But I didn't mean
08:04 rojasm perfect. But it would be nice I think also about the relation between Metware-BioMoby- and some workflow possible
08:08 egonw yes, right...
08:14 * egonw is pulling the kubuntu debs of KDE 4.0.1
08:14 egonw bbl
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09:12 steinbeck_ joined #cdk
10:03 * egonw is going to reboot into a KDE 4.0 desktop
10:03 egonw brb
10:09 egonw joined #cdk
10:11 jpansanel moin
10:17 * egonw is working in the garden
11:05 jbrefort joined #cdk
13:46 CIA-19 cdk: miguelrojasch * r10037 /branches/miguelrojasch/react​ion/src/org/openscience/cdk/ (2 files in 2 dirs):
13:46 CIA-19 cdk: resolved problem with hybridization. After that some reaction produces decreasing or increasing of the bond order must be applied:
13:46 CIA-19 cdk: reactantCloned.getAtom(atomPos​ition).setHybridization(null);
13:46 CIA-19 cdk: AtomContainerManipulator.percieveAtomT​ypesAndConfigureAtoms(reactantCloned);
13:46 CIA-19 cdk: that will register again the new AtomType configuration and thus setting the correct hybridization.
15:12 CIA-19 jmol: hansonr * r8964 /branches/v11_4/Jmol/src/org/jmol/ (4 files in 3 dirs):
15:12 CIA-19 jmol: version=11.4.RC4_dev # bug fix: fixes applet memory leak due to
15:12 CIA-19 jmol: # platform objects/delay threads not being destroyed
15:15 CIA-19 jmol: hansonr * r8965 /trunk/Jmol/src/org/jmol/ (4 files in 3 dirs):
15:15 CIA-19 jmol: 11.5.5 VERSION
15:15 CIA-19 jmol: # bug fix: fixes applet memory leak due to
15:15 CIA-19 jmol: # platform objects/delay threads not being destroyed
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15:44 jpansanel egonw : I've fixed the junior job assertTrue / assertEquals.
15:44 jpansanel I can send you the patch ?
15:59 egonw no, better upload to SF
15:59 egonw there is a Patches tracking system
15:59 egonw link is:
16:00 egonw http://sourceforge.net/tracker/?atid=32​0024&group_id=20024&func=browse
16:01 carsten joined #cdk
16:04 rojasm egonw: don't look still the code for atomtypes checking please! :) not finished
16:04 egonw umm... I should not look a the code, right?
16:05 carsten moin
16:05 rojasm yes :)
16:05 rojasm not yet
16:08 egonw rojasm: ack
16:08 egonw hi carsten
16:08 egonw carsten: 4.0.1 is a true bug fix release...
16:08 egonw hardly notice any difference :)
16:08 carsten yes, which is good
16:08 carsten no? No issues solved?
16:08 egonw it did not really crash a lot for me with .0.0
16:09 egonw and the things that did not work nicely, still don't :)
16:09 egonw e.g. I get a warning that it could not launch /usr/bin/bla
16:09 egonw whenever I use the krunner to run a KDE3 program
16:09 egonw though it properly starts up the program
16:10 carsten Which distro?
16:10 egonw kubuntu
16:11 egonw yeah, must be OS specific
16:11 carsten well, haven't used kubuntu in a long time
16:11 carsten here I don't see it (mandriva)
16:12 egonw ack
16:13 carsten But as I almost never use KDE4 anyway it might as well be a "I have never noticed" it thing
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16:45 egonw carsten: but I love the 3D acceleration
16:45 egonw the dimming of unfocused windows (not mouse over)...
16:45 * carsten isn't using 3d yet, even though he has an intel chip :(
16:45 carsten to many issues
16:45 egonw that transparency when resizing to moving a window
16:45 egonw I have intel too..
16:45 carsten I hope the 1.2.1 driver will fix those issues
16:45 egonw works nice
16:46 * carsten has the x3100
16:46 egonw 00:02.1 Display controller: Intel Corporation Mobile GM965/GL960 Integrated Graphics Controller (rev 0c)
16:47 carsten that is the controler and everything. The 3100 is the grafics core chop
16:47 carsten you probably have the x3100 or the x300
16:47 carsten you probably have the x3100 or the x3000
16:48 carsten and chop == chip
16:50 egonw well... kernel module i915
16:51 rojasm egonw: is the getAtomTypeName() from the perception extracted from cdk_atomtypes.xml?
16:51 egonw yes
16:51 egonw that is...
16:51 egonw if you use the CDKAtomTypeMatcher
16:51 egonw (which you should)
16:52 rojasm ok, thanks. Becuase I have some question about some incomings. I sent a mail to dev.list
16:54 rojasm is in some place a example of each atomType?
16:54 rojasm is there ...
16:54 egonw yeah, the test cases...
16:54 egonw I've planned to set up an ontology...
16:54 egonw with details,,
16:54 rojasm but you created already, or not yet
16:55 egonw not yet
16:55 rojasm ok
16:56 * egonw is offline to play Geister Treppe with the kids...
17:10 CIA-19 cdk: miguelrojasch * r10038 /branches/miguelrojasch/react​ion/src/org/openscience/cdk/ (4 files in 3 dirs): added more test for all atomtypes cases!
17:10 rojasm I go at home
17:10 rojasm cu
17:10 rojasm left #cdk
17:14 egonw dinner, bbl
17:50 rojasm joined #cdk
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19:25 rojasm left #cdk
19:28 rojas1 joined #cdk
19:29 egonw hi rojas1
20:52 rojas1 hi egonw
20:52 CIA-19 jmol: nicove * r8966 /trunk/Jmol/src/org/jmol/translation/ (Jmol/pt_BR.po JmolApplet/pt_BR.po): Translation: Brazilian Portuguese (pt_BR)
21:00 CIA-19 jmol: nicove * r8967 /trunk/Jmol/src/org/jmol/viewer/Jmol.properties: Version
21:03 * egonw is going offline
21:03 * egonw worked on peak fitting today...
21:03 egonw his true NMC project :)
21:03 egonw ok, enough for today...
21:03 egonw bye
21:09 CIA-19 jmol: nicove * r8968 /branches/v11_4/Jmol/src/org/jmol/translation/ (Jmol/pt_BR.po JmolApplet/pt_BR.po): Translation: Brazilian Portuguese (pt_BR)

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