Camelia, the Perl 6 bug

IRC log for #cdk, 2008-02-07

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All times shown according to UTC.

Time Nick Message
02:29 CIA-19 jmol: hansonr * r8969 /trunk/Jmol/src/org/jmol/ (11 files in 5 dirs): version=11.5.6_dev # bug fix: fixes applet memory leak in relation to consoles
03:17 CIA-19 jmol: hansonr * r8970 /branches/v11_4/Jmol/src/org/jmol/ (shape/Text.java viewer/Jmol.properties): version=11.4.RC4_dev # bug fix: labels not appearing in contrast when given same color as background
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07:26 rojasm moin
07:28 egonw hi rojasm
07:57 jpansanel moin
07:59 rojasm egonw: sorry a question: piBondCount means for example 'C#' = 2, 'C=' = 1, '=C=' = 2?
08:00 egonw right
08:00 rojasm :)
08:00 egonw bad name
08:00 egonw I know...
08:00 rojasm Not at all. for me. I find ok
08:01 egonw OK, got to head to Biometris... meeting at 10... and no laptop with me... so will be offline for a while...
08:24 jpansanel moin
08:24 jpansanel egonw : the patch is online
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10:44 CIA-19 bioclipse: ospjuth * r4877 /branches/bioclipse2/core/​plugins/net.bioclipse.ui/ (6 files in 3 dirs): Added dummy action command, handler, and binding to show new way of contributing menu actions to Bioclipse.
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11:46 jpansanel hi carsten
11:47 carsten Moin Jeronme!
11:47 carsten Jerome
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12:25 CIA-19 jmol: hansonr * r8971 /trunk/Jmol/src/org/jmol/ (6 files in 2 dirs):
12:25 CIA-19 jmol: version=11.5.6 labels bug fixes -- VERSION
12:25 CIA-19 jmol: # bug fix: multiline labels not positioned properly with offset 0 0
12:25 CIA-19 jmol: # bug fix: labels not scaling properly
12:39 jpansanel coffee time
12:44 CIA-19 jmol: hansonr * r8972 /trunk/Jmol/src/org/jmol/viewer/Eval.java:
12:44 CIA-19 jmol: version=11.5.6 labels bug fixes -- VERSION
12:44 CIA-19 jmol: # bug fix: multiline labels not positioned properly with offset 0 0
12:44 CIA-19 jmol: # bug fix: labels not scaling properly
12:46 CIA-19 jmol: hansonr * r8973 /trunk/Jmol/src/org/jmol/ (shape/Text.java viewer/Jmol.properties): version=11.5.6 # bug fix: sets offset based on imageFontScaling, not overall font scaling
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12:59 CIA-19 bioclipse: ospjuth * r4878 /branches/bioclipse2/core/​plugins/net.bioclipse.ui/ (4 files in 3 dirs): Added a preference initializer.
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13:48 CIA-19 jmol: rkanters * r8974 /trunk/Jmol-datafiles/spinput/ (5 files): Spartan spinput test files
13:56 CIA-19 jmol: rkanters * r8975 /trunk/Jmol/test/org/jmol/adapter/s​marter/TestSmarterJmolAdapter.java: Added testing for spinput files (of type Odyssey).
14:06 CIA-19 jmol: hansonr * r8976 /trunk/Jmol/src/org/jmol/ (6 files in 3 dirs): version=11.5.6 # bug fix: sets offset based on imageFontScaling, not overall font scaling
15:19 rojasm egonw: around?
15:48 egonw rojasm: I am now
15:48 rojasm I would only say I sent you a mail!
15:48 rojasm But I have to read more about oxidation states and oxidation number because now I have a chaos
15:49 rojasm of concepts
15:49 egonw rojasm: I'm doing the same thing...
15:49 rojasm ups
15:49 egonw currently the cdk atom type only have the ox state implicit...
15:49 egonw e.g. via the coordination number, now still called neighborCount
15:50 egonw but I'm not against including the ox state....
15:50 egonw no need to put it in the id... but not a bad idea either...
15:50 egonw trying to make sense of your table now :)
15:50 rojasm ok
15:50 rojasm perfect
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17:31 rojasm can some body  help me?
17:31 rojasm Yesterday I used upgraded apt-get function and it asked for removing some things. I said yes. But I didn't check exactly what was. Today when I start again my computer the gui login is not coming anymore. I have to use manually startx function to initiate
17:31 rojasm what is the problem?
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18:00 CIA-19 jmol: hansonr * r8977 /trunk/Jmol/src/org/jmol/viewer/ (Jmol.properties StateManager.java): version=11.5.6 # bug fix: setParameterValue("perspecti​veDepth",perspectiveDepth);
18:02 CIA-19 jmol: hansonr * r8978 /branches/v11_4/Jmol/src/org/jmol/viewer/ (Jmol.properties StateManager.java): version=11.4.RC4 # bug fix: setParameterValue("perspecti​veDepth",perspectiveDepth);
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18:18 CIA-19 jmol: hansonr * r8979 /branches/v11_4/Jmol/src/org/jmol/ (modelset/ModelCollection.java viewer/Jmol.properties): version=11.4.RC4 # bug fix: HETATM atoms not automatically bonded to nearby ATOM atoms
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18:18 CIA-19 jmol: hansonr * r8980 /trunk/Jmol/src/org/jmol/ (modelset/ModelCollection.java viewer/Jmol.properties): version=11.5.6 # bug fix: HETATM atoms not automatically bonded to nearby ATOM atoms
18:22 CIA-19 jmol: hansonr * r8981 /trunk/Jmol/src/org/jmol/modelsetbio/ (AlphaPolymer.java BioPolymer.java): 11.5.6 efficiencies and debug comments
18:58 rojasm joined #cdk
18:59 rojasm egonw: around?
19:04 CIA-19 jmol: nicove * r8982 /trunk/Jmol/src/org/jmol/viewer/Jmol.properties: Version
19:23 CIA-19 jmol: hansonr * r8983 /trunk/Jmol-datafiles/tests/scripts/run/ (README.txt monster_script.spt): script updates
19:25 CIA-19 jmol: nicove * r8984 /branches/v11_4/Jmol/src/org/​jmol/viewer/Jmol.properties: Version
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20:35 egonw_ CDK is mentioned in Nature :)
20:35 egonw_ http://www.nature.com/nature/jou​rnal/v451/n7179/pdf/451648a.pdf
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20:56 egonw_ rojasm: http://www.nature.com/nature/jou​rnal/v451/n7179/pdf/451648a.pdf
20:56 egonw_ CDK in Nature!
20:57 egonw_ going offline now...
20:57 egonw_ rojasm: we'll chat tomorrow...
20:57 egonw_ will try to read your email tomorrow morning...
20:57 egonw_ btw, it looks like I'll be in Leiden next Tuesday too...
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