Camelia, the Perl 6 bug

IRC log for #cdk, 2008-02-29

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All times shown according to UTC.

Time Nick Message
00:47 CIA-18 cdk: dleidert * r10279 /trunk/cdk/src/main/org/opensci​ence/cdk/config/data/html.xsl: Fix title bug. Fix markup.
00:51 CIA-18 cdk: dleidert * r10280 /trunk/cdk/src/main/org/opensci​ence/cdk/config/data/html.xsl: Another small HTML markup fix.
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07:58 CIA-18 bioclipse: Annzi * r4920 /branches/bioclipse2/chemoinformatics/ne​t.bioclipse.moss/src/net/bioclipse/moss/ (8 files in 2 dirs): Changes in parameter settings, layout and catching errors
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08:19 egonw moin
08:20 * egonw is sending around copies of his thesis today
08:29 carsten joined #cdk
08:29 rojasm moin
08:29 rojasm oh gratulations egonw
08:29 egonw rojasm: can you please email me the post address of your deparment?
08:30 rojasm less days for the important day
08:30 rojasm yes!
08:32 egonw to the others... if you like a copy too, email me your postal address too
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08:59 jpansanel moin
09:00 jpansanel egonw : congrulation for ending your thesis
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10:47 CIA-18 jmol: hansonr * r9023 /trunk/Jmol/src/org/jmol/ (3 files in 3 dirs): version=11.5.10_dev # bug fix: JVXL writing does not properly save pocket cavities or minsets
10:53 CIA-18 bioclipse: ospjuth * r4921 /trunk/ (2 files in 2 dirs): Added org.eclipse.ui.net which was missing from release and caused pproxy settings tab in preferences to be missing.
10:59 CIA-18 jmol: hansonr * r9024 /trunk/Jmol/src/org/jmol/ (shapespecial/Isosurface.java viewer/Jmol.properties): version=11.5.10_dev # bug fix: ISOSURFACE LIST command requires current isosurface
10:59 CIA-18 jmol: hansonr * r9025 /branches/v11_4/Jmol/src/org/jmol/ (3 files in 3 dirs):
10:59 CIA-18 jmol: version=11.4.RC8_dev
10:59 CIA-18 jmol: # bug fix: ISOSURFACE LIST command requires current isosurface
10:59 CIA-18 jmol: # bug fix: JVXL writing does not properly save pocket cavities or minsets
11:09 CIA-18 jmol: hansonr * r9026 /branches/v11_4/Jmol/src/org/​jmol/viewer/Jmol.properties: 11.4.RC8 VERSION
11:10 CIA-18 jmol: hansonr * r9027 /trunk/Jmol/src/org/jmol/viewer/Jmol.properties: version=11.5.10
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11:44 CIA-18 bioclipse: ospjuth * r4922 /branches/bioclipse2/bioinformatics/plug​ins/net.bioclipse.biojava.ui/plugin.xml: Refactored Biojava UI menus to use new Menu extensions
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13:08 jpansanel Mychem v0.5.0 released
13:21 dleidert jpansanel: I took a quick look to check, if this should/can be packaged for Debian
13:22 dleidert but: why do you put installation instructions in XML format into the source? where is the plain text or HTML?
13:23 dleidert I mean, this is hard to read for users and I wouldn't expect users to first create text/html/pdf outoput from the DB XML just to get some instrucions about the installation
13:24 dleidert would you mind adding a plain text INSTALL file?
13:43 jpansanel dleidert : ok, I'll do it
13:46 man-di dleidert: you are looking into packaging Mychem?
13:46 dleidert I'm further a bit concerned by the "initialization discards qualifiers from pointer target type" and the same warnings for results
13:46 dleidert man-di: yes
13:46 man-di dleidert: okay, then I kill that off my TODO list
13:46 man-di dleidert: if you need a sponsor you know how to find me :-)
13:47 dleidert I will need some time (diploma exams in April)
13:47 dleidert man-di: I know :)
13:47 dleidert BTW: What about lucene2? Any news?
13:47 man-di dleidert: I dont had time to look into it again, yet. Sorry
13:48 man-di dleidert: there is again a new lucene2 upstream release to package...
13:48 man-di dleidert: perhaps I can look into your package this weekend
13:49 dleidert ok ..., would you mind sponsoring the w3c-package to the 10-days NMU queue? - it fixes a real issues in any case (docbook also creates the symlinks for moved entities, so th reported was right)
13:49 dleidert s/th reported/the reporter
13:50 man-di dleidert: yes
13:52 dleidert man-di: would you maybe also be so kind to sponsor the other 6 packages mentioned at http://debian.wgdd.de/debian/incoming/packages/ too? Michael Banck is also very busy atm and does not find time to rebuild and upload them ... but these packages wpould fix a lot of bugs
13:54 man-di dleidert: yes, please mail be about this, I use mutt as my TODO manager...long story
13:54 dleidert k
13:55 egonw dleidert: what's in the w3c-package?
13:55 dleidert a bug fix for the XHTML DTDs - we (Debian) move the entities out of the directory and use catalogs to "fix" the new location
13:56 dleidert but catalog support is not available by default in Java (you need extra package like the arbortext classes or xml-commons resolver)
13:56 dleidert in this case, simply symlinks are created
13:56 egonw ack
13:56 dleidert egonw: BTW yesterday I short look into the XSL files in cdk
13:56 egonw yes, saw the commit
13:57 dleidert yes, this one was obvious
13:57 dleidert however, if I find some time I would like to check some of the other - I saw some more "issues" (nothing serious) to improve
13:57 dleidert Am I allowed to do this?
14:04 egonw sure
14:04 egonw stricktly speaking, you'd discuss things with the maintainer of that file...
14:04 egonw which is me for html.xsl
14:04 egonw so please go ahead...
14:05 egonw and I'll complain when I disagree with a patch :)
14:06 man-di egonw: is this weekend still the ETA for cdk 1.0.2 release?
14:07 jpansanel dleidert : I've written the INSTALL file
14:07 egonw man-di: yes
14:07 man-di egonw: cool
14:07 jpansanel (it's uploaded on the SVN server)
14:07 dleidert jpansanel: thanks. did you saw my second comment regrding the compiler warnings?
14:07 jpansanel yes
14:08 jpansanel It's in the molmatch and conversion module (fingerprint function) if I'm right ?
14:08 dleidert do you need a patch?
14:08 dleidert yes
14:08 jpansanel I'll fix it
14:08 dleidert + helper.c
14:08 jpansanel helper also ?
14:09 CIA-18 bioclipse: ospjuth * r4923 /branches/bioclipse2/core/​plugins/net.bioclipse.ui/ (3 files in 3 dirs): Refactored out DummyMenu and handlers to template plugin.
14:09 dleidert molmatch has just some unused variables
14:09 jpansanel unused variables is comming from the MySQL UDF api
14:09 dleidert helper.c:  warning: return discards qualifiers from pointer target type (83, 102)
14:10 dleidert conversion.c: initialization discards qualifiers from pointer target type
14:10 dleidert lines 159, 160, 218, 219, 389, 390, 507, 508
14:10 CIA-18 bioclipse: ospjuth * r4924 /branches/bioclipse2/_playgro​und_/net.bioclipse.template/: Initial import of a template plugin with examples for new developers of Bioclipse2.
14:11 CIA-18 bioclipse: ospjuth * r4925 /branches/bioclipse2/_playgro​und_/net.bioclipse.template/ (31 files in 11 dirs): Initial import of a template plugin with examples for new developers of Bioclipse2.
14:11 dleidert I did not yet take a look at the source (compiled with mysql 5.0.51a)
14:12 jpansanel helper is easy to fix
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14:12 jpansanel (I'm returning const char instead of char)
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14:57 dleidert man-di: would you mind adding conflicts/replaces with my old CDK packages for the official cdk Debian package?
14:58 dleidert I'm currently cleaning my personal archive and this step would make it easier for people still having my packages installed
14:58 man-di but libcdk-java doesnt replace cdk
14:59 man-di I can conflict if you like
15:13 dleidert man-di: at least conflict wih the packge(s) that ship the "same" jars
15:15 man-di libcdk-java whould conflict with itself?
15:16 man-di s/w/s/
15:38 dleidert did I nameit this way?
15:38 dleidert Doh!
15:39 dleidert sorry, I'm currently writing a NEWS entry to inform users about removed packages
16:53 Annzi left #cdk
17:34 CIA-18 bioclipse: jonalv * r4926 /branches/bioclipse2/core/plugins/ (12 files in 3 dirs): Renamed Record => MethodRecord and added CompositeRecord
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17:46 CIA-18 jmol: hansonr * r9028 /trunk/Jmol/src/org/jmol/_do​cuments/vdw_comparison.xls: van der waals radius comparison Excel spreadsheets
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17:54 CIA-18 bioclipse: carl_masak * r4927 /branches/bioclipse2/core/plugins/n​et.bioclipse.core/src/net/bioclipse​/recording/IHistoryListener.java:
17:54 CIA-18 bioclipse: [IHistoryListener.java]
17:54 CIA-18 bioclipse: * whitespace
17:55 CIA-18 bioclipse: carl_masak * r4928 /branches/bioclipse2/core/plugins/net.bioclipse.co​re/src/net/bioclipse/recording/MethodRecord.java:
17:55 CIA-18 bioclipse: [MethodRecord.java]
17:55 CIA-18 bioclipse: * fixed typo
17:56 CIA-18 bioclipse: jonalv * r4929 /branches/bioclipse2/core/plugins/net.bio​clipse.core/src/net/bioclipse/recording/ (6 files):
17:56 CIA-18 bioclipse: Added interface IRecord
17:56 CIA-18 bioclipse: And created NoSuchScriptLAnguageFound exception
17:58 CIA-18 bioclipse: jonalv * r4930 /branches/bioclipse2/core/plugins/​net.bioclipse.ui/src/net/bioclipse​/ui/views/ActionHistoryView.java: fixed forgotten refactoring into IRecord
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18:44 CIA-18 jmol: nicove * r9029 /trunk/Jmol/src/org/jmol/viewer/Jmol.properties: Version
18:56 CIA-18 jmol: nicove * r9030 /trunk/Jmol-FAH/projects/p3306.xyz.gz: Folding@Home
18:58 CIA-18 jmol: hansonr * r9031 /trunk/Jmol/src/org/jmol/ (4 files in 4 dirs): version=11.5.11_dev # bug fix: GAMESS reading of F orbital order incorrect
19:02 CIA-18 jmol: hansonr * r9032 /branches/v11_4/Jmol/src/org/jmol/ (4 files in 4 dirs): version=11.4.RC8_dev # bug fix: GAMESS reading of F orbital order incorrect
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