Camelia, the Perl 6 bug

IRC log for #cdk, 2008-03-03

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All times shown according to UTC.

Time Nick Message
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08:29 egonw Conrad: ping
08:47 CIA-18 cdk: egonw * r10285 /trunk/cdk/src/test/org/openscience/cd​k/atomtype/AbstractAtomTypeTest.java: Added JavaDoc to two methods
08:49 CIA-18 cdk: egonw * r10286 /trunk/cdk/src/test/org/openscience/cdk/atomtype/ (AbstractAtomTypeTest.java CDKAtomTypeMatcherTest.java): Test that the tested atom type is actually existing in the atom type list
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09:39 CIA-18 bioclipse: jonalv * r4931 /branches/bioclipse2/core/plugins/net.bioclip​se.core.tests/net.bioclipse.recording/net/bio​clipse/recording/ScriptGenerationTests.java: Fixed indentation broken due to name refactoring
09:47 Conrad egonw: pong
09:47 egonw Conrad: you remember Yong Zhang from the UCC?
09:47 Conrad egonw: yes, I'm still in contact with yy
09:47 egonw brilliant
09:47 egonw might you email me his work address?
09:48 egonw is he on LinkedIn ?
09:48 Conrad egonw: yes , he is on linkedin, but not actively using it
09:48 CIA-18 bioclipse: carl_masak * r4932 /branches/bioclipse2/core/plugins/net.bioclip​se.core.tests/net.bioclipse.recording/net/bio​clipse/recording/ScriptGenerationTests.java:
09:48 CIA-18 bioclipse: [ScriptGenerationTests.java]
09:48 CIA-18 bioclipse: * renamed variables into nouns
09:48 CIA-18 bioclipse: * reversed order of some assertEquals calls
09:48 CIA-18 bioclipse:  (expected result should be first)
09:49 egonw ok, might you email his LinkedIn account too then?
09:55 CIA-18 bioclipse: jonalv * r4933 /branches/bioclipse2/core/plugins/net.bioclip​se.core.tests/net.bioclipse.recording/net/bio​clipse/recording/ScriptGenerationTests.java: Added test for script generation for a manager method returning a bioObjectlist
10:02 CIA-18 bioclipse: carl_masak * r4934 /branches/bioclipse2/core/plugins/net.bioclip​se.core.tests/net.bioclipse.recording/net/bio​clipse/recording/ScriptGenerationTests.java:
10:02 CIA-18 bioclipse: [ScriptGenerationTests.java]
10:02 CIA-18 bioclipse: * renamed variables for increased consistency
10:15 CIA-18 bioclipse: carl_masak * r4935 /branches/bioclipse2/core/plugins/net.bioclip​se.core.tests/net.bioclipse.recording/net/bio​clipse/recording/ScriptGenerationTests.java:
10:15 CIA-18 bioclipse: [ScriptGenerationTests.java]
10:15 CIA-18 bioclipse: * refactored common test workflow into method
10:22 CIA-18 bioclipse: carl_masak * r4936 /branches/bioclipse2/core/plugins/net.bioclip​se.core.tests/net.bioclipse.recording/net/bio​clipse/recording/ScriptGenerationTests.java:
10:22 CIA-18 bioclipse: [ScriptGenerationTests.java]
10:22 CIA-18 bioclipse: * extended test a bit
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10:40 CIA-18 bioclipse: jonalv * r4937 /branches/bioclipse2/core/plugins/ (6 files in 2 dirs): Removed returntype param from record class. It was redundant and not even used for the moment.
10:56 CIA-18 bioclipse: ospjuth * r4938 /branches/bioclipse2/_playgro​und_/net.bioclipse.template/ (9 files in 5 dirs): Updated template project with a project, builder, and Nature.
11:43 de_maas joined #cdk
12:09 de_maas Hi Egon
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12:12 de_maas I was just building something around the SMARTSQueryTool but I noticed it was removed from the release. Can I use it from the TRUNK and what kind of problems would I encounter?
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13:59 CIA-18 bioclipse: jonalv * r4939 /branches/bioclipse2/core/plugins/net.bioclip​se.core.tests/net.bioclipse.recording/net/bio​clipse/recording/ScriptGenerationTests.java: Created test for BioObject recording events
14:12 CIA-18 cdk: miguelrojasch * r10287 /branches/miguelrojasch/reaction/src/m​ain/org/openscience/cdk/reaction/type/ (31 files): Added correct copyright. Correction in the specifications.
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14:36 egonw de_maas: yes, please use the TRUNK version
14:36 egonw SMARTS was removed from cdk_1.0.x/ because it contained bugs for which the fixes in trunk/ used J5 syntax
14:37 egonw and no one was interested in backporting those fixes
14:39 de_maas Backporting as into jdk 1.4 or so?
14:40 jpansanel moin
14:40 de_maas egonw: So if I use latest java version I can use the smart stuff without problems?
14:41 egonw mom, bbl
15:32 egonw you'll need CDK trunk/ with Java5 or better
15:32 de_maas Check
15:33 de_maas Got it working :-)
15:33 egonw ok, excellent
15:33 egonw make sure to check CDK Nightly to see of active problems
15:33 egonw or limitations
15:33 de_maas OK
15:34 CIA-18 bioclipse: carl_masak * r4940 /branches/bioclipse2/core/plugins/n​et.bioclipse.core/src/net/bioclipse​/recording/JsScriptGenerator.java:
15:34 CIA-18 bioclipse: [JsScriptGenerator.java]
15:34 CIA-18 bioclipse: * removed unused import
15:34 CIA-18 bioclipse: * removed empty method
15:34 CIA-18 bioclipse: * factored contents of for loop out into proper method
15:34 CIA-18 bioclipse: * simplified adding of objects so no reversal
15:35 CIA-18 bioclipse:  is needed afterwards
15:35 CIA-18 bioclipse: jonalv * r4941 /branches/bioclipse2/core/plugins/net.bioclipse.co​re/src/net/bioclipse/recording/MethodRecord.java: Made MethodRecord abstract
16:01 CIA-18 bioclipse: jonalv * r4942 /branches/bioclipse2/core/plugins/net.bioclip​se.core.tests/net.bioclipse.recording/net/bio​clipse/recording/ScriptGenerationTests.java: Added test for script generation of use of objects in a BioObjectList
16:20 CIA-18 bioclipse: ospjuth * r4943 /branches/bioclipse2/plugins/: Placeholder for all active plugins in Bioclipse that are not considered for testing or temporary usage (which should be placed in _playground_).
16:21 CIA-18 bioclipse: ospjuth * r4944 /branches/bioclipse2/features/: Placeholder for all active features in Bioclipse that are not considered for testing or temporary usage (which should be placed in _playground_).
16:24 CIA-18 bioclipse: ospjuth * r4945 /branches/bioclipse2/plugin​s/net.bioclipse.services/: Initial import of services plugin.
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16:24 CIA-18 bioclipse: ospjuth * r4946 /branches/bioclipse2/plugi​ns/net.bioclipse.services/ (25 files in 11 dirs): Initial import of services plugin.
16:34 CIA-18 bioclipse: ospjuth * r4947 /branches/bioclipse2/core/​plugins/net.bioclipse.ui/ (8 files in 6 dirs): Refactored out services part to a new plugin.
16:39 CIA-18 bioclipse: Annzi * r4948 /branches/bioclipse2/chemoinformatics/net.bi​oclipse.moss/src/net/bioclipse/moss/wizards/ (MossWizard.java ParametersPage.java): warnings were added and started on disabling next and finish buttons if something is wrong not working correctly at the moment
16:45 Annzi left #cdk
17:01 CIA-18 jmol: hansonr * r9049 /branches/v11_4/Jmol/src/org/jmol/ (2 files in 2 dirs): version=11.4.RC9_dev # bug fix: Spartan SMOL directory reader doesn't assign bonds
17:02 CIA-18 jmol: hansonr * r9050 /trunk/Jmol/src/org/jmol/ (2 files in 2 dirs): version=11.5.13_dev # bug fix: Spartan SMOL directory reader doesn't assign bonds
17:10 CIA-18 bioclipse: carl_masak * r4949 /branches/bioclipse2/core/plugins/net.bio​clipse.core/src/net/bioclipse/recording/ (JsScriptGenerator.java MethodRecord.java):
17:10 CIA-18 bioclipse: [JsScriptGenerator.java]
17:10 CIA-18 bioclipse: * implemented a few ScriptGenerationTests
17:10 CIA-18 bioclipse: [MethodRecord.java]
17:10 CIA-18 bioclipse: * added return type field
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17:25 CIA-18 jmol: hansonr * r9051 /trunk/Jmol/src/org/jmol/ (3 files in 2 dirs): 11.5.13_dev new feature: Spartan archive reader now reads aromatic bonding
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18:02 CIA-18 bioclipse: jonalv * r4950 /branches/bioclipse2/core/plugins/net.bioclipse.co​re/src/net/bioclipse/recording/MethodRecord.java: Removed proxy information from the String representing the class when generating variablenames in java scripts. This is a bit of a hack but it should be specific enough to not come bite us later.
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