Camelia, the Perl 6 bug

IRC log for #cdk, 2008-03-20

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All times shown according to UTC.

Time Nick Message
03:18 CIA-11 jmol: hansonr * r9169 /branches/bob-deleteatoms/: bob-deleteatoms deleted
03:19 CIA-11 jmol: hansonr * r9170 /branches/bob-minimize/:
03:21 CIA-11 jmol: hansonr * r9171 /branches/bob-minimize/Jmol/: Bob's experiment in implementing OpenBabel ForceField classes and minimization
05:22 jbrefort joined #cdk
07:16 rojasm joined #cdk
07:50 rojasm moin
08:07 thomas_ku moin
08:26 jpansanel moin
08:46 de_maas joined #cdk
09:21 Annzi joined #cdk
09:23 jonalv joined #cdk
09:39 masak joined #cdk
10:04 carsten joined #cdk
10:12 CIA-11 bioclipse: jonalv * r5148 /bioclipse2/trunk/plugins/net.bioclipse.scripting​/src/net/bioclipse/scripting/JsEnvironment.java: Added (some sort of) logging. When not finding a service it now fails gracefully and logs error.
10:15 egonw joined #cdk
10:42 egonw guys, is a java.util.List ordered?
10:42 egonw does the order change under certain conditions, or does that never happen?
10:44 thomas_ku http://java.sun.com/j2se/1.4.2​/docs/api/java/util/List.html
10:44 egonw yeah, read that...
10:44 thomas_ku it should be an odered collection
10:44 egonw quote?
10:44 thomas_ku "An ordered collection (also known as a sequence)."
10:45 egonw first setence
10:45 egonw overlooked that
10:45 thomas_ku ;-)
10:57 CIA-11 cdk: egonw * r10456 /cdknews/trunk/ojs29/ (Makefile art.tex wrapper.tex): Did a spell check and layout
11:00 jbrefort joined #cdk
11:12 CIA-11 cdk: egonw * r10457 /cdk/trunk/src/test/org/openscience/cdk/for​mula/MolecularFormulaManipulatorTest.java: Added a formula test when isotopes are used
11:24 egonw lunch time
11:44 CIA-11 bioclipse: Annzi * r5149 /bioclipse2/trunk/plugins/net.bioclipse.moss/ (9 files in 5 dirs): Browsers for output files were added (not working yet). Some parameters were removed and some layout changes were done.
11:56 Annzi left #cdk
12:07 CIA-11 bioclipse: jonalv * r5150 /bioclipse2/trunk/plugins/net.biocl​ipse.usermanager/src/net/bioclipse/ (10 files in 5 dirs): refactored UserManager now compiles. Might not do things right yet though...
12:07 carsten egonw: do you have any ideas to that plasmoid
12:07 carsten btw, it has nothing to do with Kalzium, it is just a bodr frontend so to speak
12:08 carsten egonw: I am simply using kalzium xml parser and 'element' class
12:08 egonw doesn't Kalzium have a 'did you know' part?
12:08 egonw that would be nice to have as daily plasmoid
12:12 carsten with what kind of data?
12:12 carsten did you know that Carbon weights 12 u and Gold melts with 1234K?
12:13 egonw or, things like... did you know carbon was discovered by X in 10000BC?
12:14 carsten good idea
12:14 carsten and easy to do
12:14 egonw indeed
12:16 carsten and the second applet using the data engine :-)
12:16 carsten Plasma has a really nice design
12:16 egonw did you know element is found in device Y?
12:16 egonw and include the Kalzium icon...
12:17 carsten egonw: that as the design part http://rubric.jpl.nasa.gov/images/chalkboard.jpg
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12:19 carsten egonw: so many plasmoids are emerging these days
12:19 carsten and with goya KGetHotNewStuff is very cool. Has just been added to Plasma (to get new plasmoids)
12:28 egonw is that going to be part of 4.0.3 or so?
12:28 egonw which must be due soon?
12:28 carsten first week of april for 403
12:28 carsten and no, that is for 4.1
12:28 carsten in two days there will be the next round of backports to plasma for 40
12:28 carsten in two days there will be the next round of backports to plasma for 403
12:30 CIA-11 bioclipse: carl_masak * r5151 /bioclipse/trunk/ (2 files in 2 dirs): Moved net.bioclipse.base2 out of playground
12:33 egonw ok, thanx for that info
12:33 carsten and there will be a Plasma sprint in Milano in April!
12:37 * carsten switches to KDE4
12:39 carsten joined #cdk
12:43 CIA-11 bioclipse: carl_masak * r5152 /bioclipse/trunk/plugins/net.bioclipse.base​2/src/net/bioclipse/base2/model/Assay.java:
12:43 CIA-11 bioclipse: [Assay.java]
12:43 CIA-11 bioclipse: * removed unused import
12:47 CIA-11 bioclipse: jonalv * r5153 /bioclipse2/trunk/plugins/ (4 files in 4 dirs): The UserManager at least start now...
13:01 CIA-11 bioclipse: jonalv * r5154 /bioclipse2/trunk/_playground_​/net.bioclipse.keyring.demo/: Initial copying for a demo plugin for the usermanager
13:02 CIA-11 bioclipse: jonalv * r5155 /bioclipse2/trunk/_playground_/ (net.bioclipse.keyring.demo/ net.bioclipse.usermanager.demo/): renamed keyring.demo to usermanager.demo
13:06 carsten Fact of the day:  "Did you know that the element Antimony has the symbol Sb?"
13:22 carsten joined #cdk
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13:34 carsten joined #cdk
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13:40 CIA-11 bioclipse: carl_masak * r5156 /bioclipse/trunk/plugins/net.biocli​pse.base2/src/net/bioclipse/base2/ (4 files in 3 dirs): * added login dialog
13:43 CIA-11 bioclipse: jonalv * r5157 /bioclipse2/trunk/_playground_/​net.bioclipse.usermanager.demo/ (8 files in 6 dirs): work on transforming keyringdeom inte usermanagerdemo
13:45 CIA-11 bioclipse: jonalv * r5158 /bioclipse2/trunk/plugins/net.bioclipse.u​sermanager/src/net/bioclipse/usermanager/ (IUserManagerListener.java business/UserManager.java): renaming of some keyring named thjings
13:50 CIA-11 bioclipse: jonalv * r5159 /bioclipse2/trunk/_playground_/net.b​ioclipse.usermanager.demo/.project: renamed project
14:05 CIA-11 bioclipse: carl_masak * r5160 /bioclipse/trunk/plugins/net.bioclipse.base2/​src/net/bioclipse/base2/views/TreeView.java:
14:05 CIA-11 bioclipse: [TreeView.java]
14:05 CIA-11 bioclipse: * added double click action
14:51 egonw joined #cdk
15:53 Annzi left #cdk
17:02 CIA-11 bioclipse: Annzi * r5161 /bioclipse2/trunk/plugins/net.bioc​lipse.moss/src/net/bioclipse/moss/ (4 files in 3 dirs): Browse function works better now
18:22 CIA-11 jmol: hansonr * r9172 /trunk/Jmol/src/org/jmol/viewer/ (Eval.java Jmol.properties): version=11.5.21_dev # bug fix: load unitcell {a b c alpha beta gamma} not working (since 11.5.8)
18:38 carsten joined #cdk
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18:52 egonw moin
18:54 carsten egonw: cf my new blog
18:55 egonw yeah, just read it :)
18:55 egonw nice to see so many comments
18:59 carsten I like the equation plasmoid
19:24 CIA-11 cdk: egonw * r10458 /cdk/trunk/src/test/org/openscience​/cdk/io/cml/cml23TestFramework.xml: Added a metabolomics scenario
19:25 CIA-11 cdk: egonw * r10459 /cdk/trunk/ (2 files in 2 dirs): Upgraded to rJava 0.5
19:30 CIA-11 cdk: egonw * r10460 /cdk/trunk/src/main/org/openscience/cdk/ (23 files): Fixed not outputting of null values (closes #1903813)
21:50 jbrefort joined #cdk
23:49 CIA-11 bioclipse: rklancer * r5162 /bioclipse2/trunk/ (32 files in 17 dirs): Mass replacement of net.bioclipse.logging.PluginLogManager.getLogger() with org.apache.log4j.Logger.getLogger in anticipation of retirement of net.bioclipse.logging
23:52 CIA-11 bioclipse: rklancer * r5163 /bioclipse2/trunk/plugins/net.bi​oclipse.ui/src/net/bioclipse/ui/ (Activator.java BioclipseActivator.java):
23:52 CIA-11 bioclipse: Fix Spring Bundle Extender startup to warn if there are multiple or no bundle
23:52 CIA-11 bioclipse: extenders to choose from. Might save a headache someday as they're not declared
23:52 CIA-11 bioclipse: singleton. Introduction of handy map & filter (but not yet reduce) utility
23:52 CIA-11 bioclipse: classes (access modifier is private in n.b.ui.Activator, for now).

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