Camelia, the Perl 6 bug

IRC log for #cdk, 2008-04-09

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All times shown according to UTC.

Time Nick Message
04:00 jbrefort joined #cdk
07:00 malick joined #cdk
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08:09 thomas_ku moin
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09:26 CIA-30 bioclipse: jonalv * r5388 /bioclipse2/trunk/plugins/ (2 files in 2 dirs): Fixed a problem in the Tablecreator which gave problems when it got called multiple times during for example a test run for all structuredb tests.
10:53 CIA-30 cdk: miguelrojasch * r10586 /cdk/branches/miguelrojasch-CMLReact/src​/main/org/openscience/cdk/isomorphism/ma​tchers/QueryAtomContainerCreator.java: Iterators parameterized to IBond
11:02 thomas_ku joined #cdk
11:05 CIA-30 cdk: thomaskuhn * r10587 /cdk-taverna/trunk/src/main/java/org/opens​cience/cdk/applications/taverna/database/ (5 files in 2 dirs): Add a first implementation of a postgres database worker. Really only start for a database connection to postgres database which uses the pgchem tigris open source cartridge
11:09 CIA-30 cdk: thomaskuhn * r10588 /cdk-taverna/trunk/src/main/java/org/​openscience/cdk/applications/taverna/​io/ReadMDLSDFileAsDatabaseInput.java:
11:09 CIA-30 cdk: Add a worker wich can read MDL SD-files and stores the molecules into a list of strings. Each string represents one mol file! This is necessary because the database will take a mol file as string as input of a molecule.
11:09 CIA-30 cdk: This is only a first test implementation. It needs still more work and a GUI for defining the db connection and the sql string
11:09 CIA-30 cdk: thomaskuhn * r10589 /cdk-taverna/trunk/src/main/java/org/opens​cience/cdk/applications/taverna/io/action/​ReadMDLSDFileAsDatabaseInputAction.java:
11:09 CIA-30 cdk: Add a worker wich can read MDL SD-files and stores the molecules into a list of strings. Each string represents one mol file! This is necessary because the database will take a mol file as string as input of a molecule.
11:09 CIA-30 cdk: This is only a first test implementation. It needs still more work and a GUI for defining the db connection and the sql string
11:12 CIA-30 cdk: thomaskuhn * r10590 /cdk-taverna/trunk/src/main/java/org/opensci​ence/cdk/applications/taverna/io/iterative/ (5 files): Add an iterative SD file reader which can be used for large sd files. This reader is supposed to output a list of strings. Each string represents one mol file
11:12 CIA-30 cdk: thomaskuhn * r10591 /cdk-taverna/trunk/src/main/java/org/openscience/​cdk/applications/taverna/registry/Registry.java: A registry which is needed for the iterative file reader
11:14 CIA-30 cdk: thomaskuhn * r10592 /cdk-taverna/trunk/src/main/resources/ (2 files in 2 dirs): Add the new worker
11:17 CIA-30 cdk: thomaskuhn * r10593 /cdk-taverna/trunk/src/test/java/org/opens​cience/cdk/applications/taverna/database/ (. pgchem/ pgchem/InsertMoleculeIntoDBTest.java): Add a Junit test
11:18 CIA-30 cdk: thomaskuhn * r10594 /cdk-taverna/trunk/src/test/java/org/opensci​ence/cdk/applications/taverna/io/iterative/ (. IteratingReaderTest.java): Add a Junit test
11:18 CIA-30 cdk: thomaskuhn * r10595 /cdk-taverna/trunk/src/test/java/org/op​enscience/cdk/applications/taverna/io/R​eadMDLMolFileAsDatabaseInputTest.java: Add a Junit test
11:20 CIA-30 cdk: thomaskuhn * r10596 /cdk-taverna/trunk/pom.xml: Update to Taverna version 1.7.1 and added the jdbc library for the postgres database connection
11:35 CIA-30 cdk: thomaskuhn * r10597 /cdk-taverna/trunk/src/main/java/org/openscienc​e/cdk/applications/taverna/io/iterative/action/ (. IteratingFileReaderAction.java): Add an Action for the iterating file reader
11:35 CIA-30 cdk: thomaskuhn * r10598 /cdk-taverna/trunk/src/main/resources​/META-INF/services/org.embl.ebi.escie​nce.scuflui.spi.ProcessorActionSPI: Add the new actions to the registry
11:55 CIA-30 cdk: thomaskuhn * r10599 /cdk-taverna/trunk/src/main/resources​/META-INF/services/org.embl.ebi.escie​nce.scuflui.spi.ProcessorActionSPI: Added a wrong class name
12:34 malick joined #cdk
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14:03 egonw moin
14:04 CIA-30 bioclipse: jonalv * r5389 /bioclipse2/trunk/plugins/ (8 files in 6 dirs): Tests are beginning to pass. 1 left on the dao level and 5 left on the internal business level.
14:17 CIA-30 bioclipse: jonalv * r5390 /bioclipse2/trunk/plugins/net.bioclipse.structur​edb.tests/tests/net/bioclipse/structuredb/intern​albusiness/StructuredbInstanceManagerTest.java: Only two tests that doesn't pass in strucutredb for the moment and they both catch the same error.
14:25 rojasm moin egonw
14:26 rojasm how is going the conference in Halle?
14:30 egonw good
14:32 CIA-30 cdk: miguelrojasch * r10600 /cdk/branches/miguelrojasch-CMLReact/src/ (6 files in 6 dirs): The resonance structure generator can be selected looking for symmetry or not.
15:02 malick joined #cdk
15:29 CIA-30 bioclipse: ospjuth * r5391 /bioclipse2/trunk/plugins/net.bioclip​se.services/src/net/bioclipse/service​s/views/model/IServiceContainer.java: Removed unused methods from interface.
15:41 steinbeck joined #cdk
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15:58 CIA-30 cdk: thomaskuhn * r10601 /cdk-taverna/trunk/src/ (26 files in 2 dirs): Some clean up and upgrade to Java 5 standards and removing some failures because of used qsar descriptors which caused problems
16:01 malick left #cdk
16:22 CIA-30 bioclipse: ospjuth * r5392 /bioclipse2/trunk/plugins/net.bioclipse.services/ (5 files in 4 dirs): Updated EP for acceptedType to allow for the specification of input types for services. For example, the ClustalW ServiceType should only accept ISequences for input from e.g. a drag and drop event.
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