Camelia, the Perl 6 bug

IRC log for #cdk, 2008-04-17

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All times shown according to UTC.

Time Nick Message
04:59 CIA-44 jmol: hansonr * r9270 /trunk/Jmol/src/org/jmol/ (g3d/Font3D.java shape/Text.java viewer/Jmol.properties): version=11.5.28_dev # bug fix: labels can change size in returning from antialiasdisplay=true to antialiasdisplay=false
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06:30 CIA-44 jmol: hansonr * r9271 /trunk/Jmol/src/org/jmol/ (4 files in 4 dirs):
06:30 CIA-44 jmol: version=11.5.28_dev ELLIPSOID
06:30 CIA-44 jmol: # bug fix: labels can change size in returning from antialiasdisplay=true to antialiasdisplay=false
06:30 CIA-44 jmol: # ELLIPSOID command -- with symmetry and crude footballs
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07:23 CIA-44 cdk: miguelrojasch * r10626 /cdk/branches/miguelrojasch-CMLReact/​src/test/org/openscience/cdk/formula/​MolecularFormulaManipulatorTest.java: added a test which confirms that before the calculation of the exact mass for a molecular formula you have to explicit the isotope type
07:31 CIA-44 jmol: hansonr * r9272 /trunk/Jmol/src/org/jmol/ (shape/Measures.java viewer/Jmol.properties):
07:31 CIA-44 jmol: version=11.5.28
07:31 CIA-44 jmol: # bug fix: state "set measures angstroms" does not include "select *"
07:31 CIA-44 jmol: # bug fix: labels can change size in returning from antialiasdisplay=true to antialiasdisplay=false
07:31 CIA-44 jmol: # ELLIPSOID command -- with symmetry and crude footballs
07:31 CIA-44 jmol: #
07:32 CIA-44 jmol: # Italian translation
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08:06 CIA-44 bioclipse: ospjuth * r5436 /bioclipse/trunk/plugins/net.bioclipse.jnanotube/: Initial import of plugin net.bioclipse.jnanotube for Bioclipse 1.2.x branch. Authors: Joe & Sam. Contact: wisarn151@hotmail.com.
08:07 CIA-44 bioclipse: ospjuth * r5437 /bioclipse/trunk/plugins/net.bioclipse.jnanotube/ (153 files in 31 dirs): Initial import of plugin net.bioclipse.jnanotube for Bioclipse 1.2.x branch. Authors: Joe & Sam. Contact: wisarn151@hotmail.com.
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09:02 thomas_ku moin
09:19 CIA-44 bioclipse: ospjuth * r5438 /bioclipse/trunk/plugins/net.bioclipse.jnanotube/ (5 files in 2 dirs): Added doc to Bioclipse online help, and made stub for user guide, about, and license.
09:47 CIA-44 cdk: egonw * r10627 /cdk/trunk/src/ (2 files in 2 dirs): Implemented Noel's request: construct MFs for major isotopes and natural masses
09:49 egonw rojasm: that patch, I think, solves Noel's request on the user ML
09:59 rojasm oo, pefect looks fine for me
10:01 egonw good :)
10:29 CIA-44 cdk: egonw * r10628 /cdk/trunk/src/ (2 files in 2 dirs): Implemented Noel's second request: convenience method for calculating natural molecular mass of an IAtomContainer
10:30 egonw thomas_ku: please let me know when I can test things...
11:02 thomas_ku egonw: yes of course
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13:35 CIA-44 cdk: egonw * r10629 /cdk/trunk/src/ (2 files in 2 dirs): Implemented Andreas' request: added support for Mol2Reader.read(IMolecule)
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13:57 CIA-44 jmol: hansonr * r9273 /trunk/Jmol/src/org/jmol/ (6 files in 4 dirs): (log message trimmed)
13:57 CIA-44 jmol: version=11.5.28 ELLIPSOID + bug fix
13:57 CIA-44 jmol: # bug fix: state "set measures angstroms" does not include "select *"
13:57 CIA-44 jmol: # bug fix: labels can change size in returning from antialiasdisplay=true to antialiasdisplay=false
13:57 CIA-44 jmol: # ELLIPSOID command -- with symmetry and crude footballs, including PDB files
13:58 CIA-44 jmol: # note that for now PDB file reading of ANISOU requires using {x y z} in load
13:58 CIA-44 jmol: # command, but you can use {1 1 0} to load ANISOU without applying symmetry
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14:10 CIA-44 bioclipse: ospjuth * r5439 /bioclipse2/trunk/plugins/net.bioclip​se.biomart/src/net/bioclipse/biomart/ (7 files in 3 dirs): Added a preference page for biomart servers.
14:11 CIA-44 bioclipse: ospjuth * r5440 /bioclipse2/trunk/plugins/net.bioclipse.b​iomart/src/net/bioclipse/biomart/wizards/ (. AttributesPage.java BiomartWizard.java tmp.txt): Started working on a wizard for Biomart queries.
14:11 CIA-44 bioclipse: ospjuth * r5441 /bioclipse2/trunk/plugins/net.bioclipse.biomart/ (META-INF/MANIFEST.MF plugin.xml): Added prefs page to manifest.
14:13 CIA-44 bioclipse: ospjuth * r5442 /bioclipse2/trunk/plugins/net.bioclipse.biomart/ (8 files in 4 dirs): Added a biomart editor as a form-based multipage editor. Started linking in filters into filtersPage.
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14:28 CIA-44 jmol: hansonr * r9274 /branches/v11_4/Jmol/src/org/jmol/ (10 files in 5 dirs): (log message trimmed)
14:28 CIA-44 jmol: version=11.4.1 VERSION -- bug fixes up to date
14:28 CIA-44 jmol: # bug fix: hover appears when a load script leaves an atom very close to (0,0) in the window
14:28 CIA-44 jmol: # bug fix: data "model"...end "model" saves state without first line if first line is empty
14:28 CIA-44 jmol: # bug fix: "show data types" putting comma in wrong location
14:28 CIA-44 jmol: # bug fix: draw width 0.05 {...} {...} -- line does not properly render
14:28 CIA-44 jmol: # bug fix: "....".trim("xyz") function not properly trimming ANY x,y,z
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14:41 CIA-44 bioclipse: ospjuth * r5443 /bioclipse2/trunk/plugins/net.bioclipse.biomart/ (6 files in 5 dirs): Double-click on dataset now opens empty editor for query construction.
15:51 CIA-44 bioclipse: carl_masak * r5444 /bioclipse2/trunk/plugins/net.biocli​pse.biomart/src/net/bioclipse/biomar​t/editors/BiomartQueryEditor.java:
15:51 CIA-44 bioclipse: [BiomartQueryEditor.java]
15:51 CIA-44 bioclipse: * whitespace nit-picking
15:51 CIA-44 bioclipse: * reconfigured constructors
15:53 * egonw is leaving for a game of basketball
15:53 egonw bye all
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19:03 CIA-44 jmol: nicove * r9275 /trunk/Jmol/src/org/jmol/viewer/Jmol.properties: Version
19:26 CIA-44 jmol: nicove * r9276 /branches/v11_4/Jmol/src/org/​jmol/viewer/Jmol.properties: Version
19:29 CIA-44 cdk: miguelrojasch * r10630 /cdk/branches/miguelrojasch-CMLReact/src/ (2 files in 2 dirs): rewrite the ReactionSetManipulator to handle only reactionSet and not schemeReactions. Replace before commit 10441
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