Camelia, the Perl 6 bug

IRC log for #cdk, 2008-04-20

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All times shown according to UTC.

Time Nick Message
05:13 jbrefort joined #cdk
06:05 ilbot2 joined #cdk
06:05 Topic for #cdkis now The Chemistry Development Kit (http://cdk.sf.net) | JUnit: 5872, 72 fails + 44 errors (3.51%) | CDK 1.0.x TODO: see http://cdk.sf.net/wiki/ | Logs at http://moritz.faui2k3.org/​irclog/out.pl?channel=cdk | CDK News paper online on pharmacophores
07:46 carsten joined #cdk
07:59 s_wolf joined #cdk
08:18 s_wolf joined #cdk
09:48 CIA-30 jmol: nicove * r9287 /trunk/Jmol-FAH/ (2 files in 2 dirs): Folding@Home
10:02 CIA-30 jmol: nicove * r9288 /trunk/Jmol/src/org/jmol/translation/ (28 files in 2 dirs): Update of .po files
10:03 carsten jbrefort: what is the best 2D editor for molecules under Linux you know?
10:05 jbrefort hmm, not sure about that
10:06 jbrefort my preferred one is of course GChemPaint, but you might prefer ChemTool og BkChem
10:06 jbrefort or, not og
10:06 jbrefort each have some featurs that the others don't have
10:08 carsten and non of them are activly developed, right?
10:08 jbrefort GChemPaint is at least
10:08 jbrefort BkChem, I think is too
10:09 carsten ghcempaint: Fix compilation with gcc-4.3 snapshot. [#21765]
10:09 carsten huh?
10:09 carsten I thought it is gtk
10:09 jbrefort it is
10:10 carsten lol
10:10 * carsten read Qt 4.3 :-)
10:14 carsten jbrefort: mmh, gchempaint isn't even installed :(
10:14 carsten jbrefort: mmh, gchempaint isn't even installable on opensuse :(
10:32 edrin joined #cdk
10:34 jbrefort carsten, what is the issue with open-suse?
10:34 carsten there is no gchem*
10:35 jbrefort know, ther has been a bug opened for a while AFAIK
10:50 mateusz joined #cdk
10:50 mateusz Hi
10:52 mateusz which version of NCBI is non redundant
10:52 mateusz ?
10:52 mateusz joined #cdk
10:52 mateusz edrin, Hi
10:52 carsten I wrote a tutorial for Git. Perhaps you are also interested: http://techbase.kde.org/index.php​?title=Development/Tutorials/Git
10:52 mateusz carsten, Hi
10:52 carsten moin moin
10:53 mateusz which version of NCBI is not rendundant ?
10:53 mateusz for proteins orginating from a given gene
10:54 * carsten doesn't even know what NCBI is :-)
11:05 mateusz is clustal's multiple alignment similar to local?
11:05 mateusz that cuts sequence ?
11:05 mateusz I want to align them globaly
11:26 edrin hi mateusz
11:26 mateusz hi
12:22 CIA-30 jmol: hansonr * r9289 /trunk/Jmol/src/org/jmol/viewer/ (Eval.java Jmol.properties StateManager.java Viewer.java):
12:22 CIA-30 jmol: version=11.5.30_dev # new feature: set sequenceRangeRasmol -- ignores ^ insertion codes in sequence code ranges
12:22 CIA-30 jmol: # and just sets the range to be "resno >= a and resno <= b"
12:41 CIA-30 jmol: hansonr * r9290 /trunk/Jmol/src/org/jmol/viewer/ (Eval.java Jmol.properties StateManager.java Viewer.java):
12:41 CIA-30 jmol: version=11.5.30_dev # new feature: set sequenceRangePhysical -- range based on file (Jmol 11.4 and previous) -- NOW DEFAULT FALSE
12:41 CIA-30 jmol: # setting false gives Rasmol-like behavior and just sets the range to be "resno >= a and resno <= b"
13:09 CIA-30 jmol: hansonr * r9291 /trunk/Jmol/src/org/jmol/viewer/Jmol.properties:
13:09 CIA-30 jmol: version=11.5.30_dev # new feature: set sequenceRangePhysical -- range based on file (Jmol 11.4 and previous) -- NOW DEFAULT FALSE
13:09 CIA-30 jmol: # setting false gives Rasmol-like behavior and just sets the range to be "resno >= a and resno <= b"
13:10 CIA-30 jmol: hansonr * r9292 /trunk/Jmol/src/org/jmol/viewer/Jmol.properties:
13:10 CIA-30 jmol: version=11.5.30_dev # new feature: set sequenceRangePhysical -- range based on file (Jmol 11.4 and previous) -- NOW DEFAULT FALSE
13:10 CIA-30 jmol: # setting false gives Rasmol-like behavior and just sets the range to be "resno >= a and resno <= b"
13:16 dleidert joined #cdk
14:00 carsten_ joined #cdk
14:40 CIA-30 bioclipse: carl_masak * r5449 /bioclipse2/trunk/plugins/net.bioclipse.ui/sr​c/net/bioclipse/ui/views/JsConsoleView.java:
14:40 CIA-30 bioclipse: [JsConsoleView.java]
14:40 CIA-30 bioclipse: * prefer to make the helper variable zzz3 local in js
14:40 CIA-30 bioclipse: * maybe even remove them after use? (since we clobbered them anyway)
15:01 edrin joined #cdk
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19:01 CIA-30 jmol: hansonr * r9293 /trunk/Jmol/src/org/jmol/ (shape/MeasuresRenderer.java viewer/Jmol.properties): (log message trimmed)
19:01 CIA-30 jmol: 11.5.30 VERSION
19:01 CIA-30 jmol: # bug fix: measurement labels for angles do not appear in slab mode (goes WAY back before 10.0)
19:01 CIA-30 jmol: # bug fix: U_iso_or_equiv fields not read in CIF
19:01 CIA-30 jmol: # bug fix: (application) writeTip GT string not defined.
19:01 CIA-30 jmol: # bug fix: (forwared compatibility) invalid state setting (due to later version) now ignored.
19:01 CIA-30 jmol: # bug fix: state for draw arrow in multimodel context delivers wrong coordinates
19:02 CIA-30 jmol: hansonr * r9294 /branches/v11_4/Jmol/src/org/jmol/ (shape/MeasuresRenderer.java viewer/Jmol.properties):
19:02 CIA-30 jmol: 11.4.2 VERSION
19:02 CIA-30 jmol: # bug fix: measurement labels for angles do not appear in slab mode (goes WAY back before 10.0)
19:02 CIA-30 jmol: # bug fix: state for draw arrow in multimodel context delivers wrong coordinates
19:02 CIA-30 jmol: # bug fix: (forwared compatibility) invalid state setting (due to later version) now ignored.
19:42 CIA-30 jmol: nicove * r9295 /trunk/Jmol/src/org/jmol/viewer/Jmol.properties: Version
19:48 CIA-30 jmol: nicove * r9296 /branches/v11_4/Jmol/src/org/​jmol/viewer/Jmol.properties: Version
19:49 CIA-30 jmol: nicove * r9297 /branches/v11_4/Jmol/src/org/​jmol/translation/JmolApplet/ (11 files): Update of .po files
19:51 CIA-30 bioclipse: ospjuth * r5450 /bioclipse2/trunk/plugins/net​.bioclipse.services.embrace/: Initial import.
19:53 CIA-30 bioclipse: ospjuth * r5451 /bioclipse2/trunk/plugins/net​.bioclipse.services.embrace/ (83 files in 29 dirs): Initial import of plugin for embrace services. Implemented services Circdna, Einvert, and Prodiv. See http://www.embracegrid.inf​o/dokuwiki/doku.php?id=wp2 for complete list of services.
20:12 edrin joined #cdk
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