Camelia, the Perl 6 bug

IRC log for #cdk, 2008-04-24

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All times shown according to UTC.

Time Nick Message
01:53 CIA-30 jmol: hansonr * r9307 /trunk/Jmol/src/org/jmol/ (7 files in 6 dirs):
01:53 CIA-30 jmol: version=11.5.31_dev ellipsoid rendering
01:53 CIA-30 jmol: # code: better ellipsoid ball rendering using Shade3D.calcIntensity()
01:53 CIA-30 jmol: # code: 2-fold improvement on rendering of ellipsoids by not using getNormix()
02:28 CIA-30 jmol: hansonr * r9308 /trunk/Jmol/src/org/jmol/viewer/ (Jmol.properties Viewer.java): version=11.5.31_dev # bug fix: set ellipsoidAxisDiameter [int] sets the diameter in milliAngstroms
04:58 jbrefort joined #cdk
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06:17 malick joined #cdk
06:17 rojasm moin
06:40 jpansanel moin
07:33 thomas_ku joined #cdk
07:35 thomas_ku moin
07:38 jonalv joined #cdk
08:13 edrin joined #cdk
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09:08 CIA-30 bioclipse: ospjuth * r5470 /bioclipse2/trunk/plugins/net.bioclipse.serv​ices/src/net/bioclipse/services/views/model/ (AbstractRunnableService.java IRunnableService.java): Updated API to make services recordable. FIXME for bug 1950475 placed for jonalv.
09:13 CIA-30 bioclipse: ospjuth * r5471 /bioclipse2/trunk/plugins/net.bioclipse​.services/src/net/bioclipse/services/vi​ews/model/AbstractRunnableService.java: Forgot the monitor in service API update.
09:17 CIA-30 bioclipse: ospjuth * r5472 /bioclipse2/trunk/plugins/net.bioclipse.services/ (18 files in 4 dirs): Adapted existing services for new RunnableService API.
09:19 CIA-30 bioclipse: ospjuth * r5473 /bioclipse2/trunk/plugins/net.bioclipse.bi​omoby/src/net/bioclipse/biomoby/services/ (6 files): Adapted existing services for new RunnableService API to allow for recording.
09:20 CIA-30 bioclipse: ospjuth * r5474 /bioclipse2/trunk/plugins/net​.bioclipse.services.embrace/ (4 files in 2 dirs): Adapted embrace services for new RunnableService API to allow for recording.
09:21 CIA-30 bioclipse: ospjuth * r5475 /bioclipse2/trunk/plugins/net.bioclipse.ui/ (14 files in 3 dirs): Added an XMLEditor. Only works for existing files and does not support NonExisitingFileInput so cannot be put in editors that operate on non-files.
09:34 CIA-30 bioclipse: ospjuth * r5476 /bioclipse2/trunk/plugins/net.bioclipse.jmol/ (9 files in 4 dirs): Implemented scripting for jmol in bc2. Command: jmol.run(String script)
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12:23 CIA-30 bioclipse: jonalv * r5477 /bioclipse2/trunk/plugins/ (2 files in 2 dirs): test for creating two folders in two different databases now passes
12:50 CIA-30 cdk: miguelrojasch * r10659 /cdk/branches/miguelrojasch-CMLReact/src/test/o​rg/openscience/cdk/io/cml/CML2WriterTest.java: removing the unnecessary prints
12:55 CIA-30 cdk: miguelrojasch * r10660 /cdk/branches/miguelrojasch-CMLReact/src/main/o​rg/openscience/cdk/reaction/ReactionStep.java: removed the ReactionSetp which had not used.
12:56 CIA-30 cdk: miguelrojasch * r10661 /cdk/branches/miguelrojasch-CMLReact/src/main/or​g/openscience/cdk/reaction/IReactionScheme.java: Added new interface to handle ReactionScheme
12:58 CIA-30 cdk: miguelrojasch * r10662 /cdk/branches/miguelrojasch-CMLReact/src/ (3 files in 3 dirs): The reactionScheme is handle now with the ReactionSchemeManipulator
13:28 CIA-30 bioclipse: jonalv * r5478 /bioclipse2/trunk/plugins/net.bioclipse.hsql​db/src/net/bioclipse/hsqldb/HsqldbUtil.java: fixed problem with wait time
14:39 steinbeck joined #cdk
14:44 CIA-30 bioclipse: ospjuth * r5479 /bioclipse2/trunk/plugins/net.bioclipse.b​iomart/src/net/bioclipse/biomart/editors/ (5 files): BiomartEditor is now marked as dirty if attributes and filters are added/removed.
15:45 CIA-30 bioclipse: egonw * r5480 /bioclipse2/trunk/plugins/net​.bioclipse.cdk10.jchempaint/ (. .classpath .project META-INF/ META-INF/MANIFEST.MF): Added empty template for CDK1.0.2 based JChemPaint editors
16:13 CIA-30 bioclipse: jonalv * r5481 /bioclipse2/trunk/plugins/net.bioclip​se.core/src/net/bioclipse/recording/ (5 files):
16:13 CIA-30 bioclipse: Added a ScriptRecord class able to store a previously generated script and
16:13 CIA-30 bioclipse: present it when generating scripts. I might be useful in some cases but I am not
16:13 CIA-30 bioclipse: sure. I wrote it while trying to solve bug #1950475, but I am not sure it is the
16:13 CIA-30 bioclipse: way to go in that case.
16:17 CIA-30 bioclipse: jonalv * r5482 /bioclipse2/trunk/plugins/net.bioclipse.ui/src/​net/bioclipse/ui/views/ActionHistoryView.java: forgot to commit the ui package... :)
17:10 carsten joined #cdk
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18:30 CIA-30 cdk: miguelrojasch * r10663 /cdk/branches/miguelrojasch-CMLReact/ (12 files in 11 dirs): Merged from /trunk/cdk, rev: 10662
18:30 carsten jpansanel: chem-file is now installed on every PC in my school :-)
19:54 CIA-30 cdk: miguelrojasch * r10664 /cdk/branches/miguelrojasch-CMLReact/src/ (3 files in 2 dirs): added ReactionScheme as interface of IReactionScheme and tests
20:59 edrin joined #cdk
21:04 CIA-30 cdk: miguelrojasch * r10665 /cdk/branches/miguelrojasch-CMLReact/src/ (10 files in 6 dirs): moved the IReactionScheme to interfaces
21:10 CIA-30 cdk: miguelrojasch * r10666 /cdk/branches/miguelrojasch-CMLReact/src/ (2 files in 2 dirs): added two classes which were unexplainable
21:27 CIA-30 cdk: miguelrojasch * r10667 /cdk/branches/miguelrojasch-CMLReact/s​rc/main/org/openscience/cdk/tools/mani​pulator/ReactionSetManipulator.java: The method getAllMolecules based on checking if IMolecules object are repeated.
21:33 rojasm left #cdk
21:42 CIA-30 cdk: miguelrojasch * r10668 /cdk/branches/miguelrojasch-CMLReact/src/main/or​g/openscience/cdk/DefaultChemObjectBuilder.java: Added the IReactionScheme to the DefaultChemObjectBuilder
21:43 CIA-30 cdk: miguelrojasch * r10669 /cdk/branches/miguelrojasch-CMLReact/src/test/org/​openscience/cdk/DefaultChemObjectBuilderTest.java: The corresponding test
22:03 CIA-30 cdk: miguelrojasch * r10670 /cdk/branches/miguelrojasch-CMLReact/src/ (2 files in 2 dirs): adjust the reactionschemeManipulator with the correct tests

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