Camelia, the Perl 6 bug

IRC log for #cdk, 2008-04-25

| Channels | #cdk index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
04:14 CIA-30 jmol: hansonr * r9309 /trunk/Jmol/src/org/jmol/ (16 files in 8 dirs): version=11.5.31_dev # code: 4-fold improvement in rendering ellipsoids by using Miguel's no-mesh idea
04:38 CIA-30 jmol: hansonr * r9310 /trunk/Jmol/src/org/jmol/ (g3d/Sphere3D.java viewer/Jmol.properties): version=11.5.31_dev # code: 2-fold improvement in rendering ellipsoids by using 40x40x40 shade cache
04:56 CIA-30 jmol: hansonr * r9311 /trunk/Jmol/src/org/jmol/g3d/Sphere3D.java: version=11.5.31_dev # code: 2-fold improvement in rendering ellipsoids by using 40x40x40 shade cache
05:13 CIA-30 jmol: hansonr * r9312 /trunk/Jmol/src/org/jmol/ (6 files in 5 dirs): version=11.5.31_dev # default change: ellipsoids are so fast now, can use default "set ellipsoidBall true"
05:44 CIA-30 jmol: hansonr * r9313 /trunk/Jmol/src/org/jmol/ (shape/Text.java viewer/Jmol.properties): version=11.5.31_dev # bug fix: picking echos not working with set antialiasdisplay
06:23 jbrefort joined #cdk
07:23 carsten joined #cdk
07:49 jonalv joined #cdk
07:57 jpansanel moin
07:57 jpansanel carsten: good news !!
08:00 thomas_ku joined #cdk
08:00 thomas_ku moin
08:03 jpansane1 joined #cdk
08:05 egonw joined #cdk
08:06 CIA-30 bioclipse: egonw * r5483 /bioclipse2/trunk/plugins/net​.bioclipse.cdk10.jchempaint/ (11 files in 9 dirs): Template for an editor; time for the 'Eclipse Building Commercial-Quality Plug-ins' book
08:07 CIA-30 bioclipse: egonw * r5484 /bioclipse2/trunk/plugins/net.bioc​lipse.cdk10.jchempaint/plugin.xml: Added missing plugin.xml
08:13 CIA-30 bioclipse: jonalv * r5485 /bioclipse2/trunk/plugins/net.bioclipse.hsql​db/src/net/bioclipse/hsqldb/HsqldbUtil.java: Removed ugly thread.sleep hack. Each method now waits until the server has reached the desired state before returning.
08:46 CIA-30 bioclipse: ospjuth * r5486 /bioclipse2/trunk/plugins/net.bi​oclipse.ui/src/net/bioclipse/ui/ (Activator.java BioclipseCache.java QsarProject.java): Added a cache dir for Bioclipse to be used by plugins who want to cache files. Default is "path/to/WorkspaceRoot/tmp".
09:06 CIA-30 bioclipse: carl_masak * r5487 /bioclipse2/trunk/plugins/net.bioclipse.hsql​db/src/net/bioclipse/hsqldb/HsqldbUtil.java:
09:06 CIA-30 bioclipse: [HsqldbUtil.java]
09:06 CIA-30 bioclipse: * spelling
09:06 CIA-30 bioclipse: * changed type of thrown exception
09:06 CIA-30 bioclipse: * removed unused imports
09:08 CIA-30 bioclipse: ospjuth * r5488 /bioclipse2/trunk/plugins/net.bioclip​se.biomart/src/net/bioclipse/biomart/ (5 files in 4 dirs): Make use of Biomart caching of config files.
11:27 jonalv joined #cdk
12:08 egonw joined #cdk
12:09 egonw mmm... a rare crash of my X11 server
12:09 egonw seemingly caused by the nmrshiftdb.org :)
12:12 * egonw was submitting the 17O NMR of water
12:13 egonw yeah, it worked now :)
12:13 * egonw 's 883 entry :)
12:13 * egonw singlehandedly double the number of spectra with only one shift :)
12:13 egonw -bled
12:13 egonw well, one has to have a hobby :)
12:22 carsten joined #cdk
12:30 CIA-30 bioclipse: ospjuth * r5489 /bioclipse2/trunk/plugins/net​.bioclipse.cdk10.jchempaint/ (9 files in 5 dirs): Added a template MPE for JCP on first page and Texteditor on second.
12:33 CIA-30 bioclipse: ospjuth * r5490 /bioclipse2/trunk/plugins/net.bioclipse.cd​k10.jchempaint/src/net/bioclipse/cdk10/jch​empaint/ui/editor/MDLMolfileEditor.java: Template to react on resource changes.
14:03 CIA-30 bioclipse: ospjuth * r5491 /bioclipse2/trunk/plugins/net.bioclipse.cdk.ui/ (4 files in 3 dirs): Added the StructureView from Bioclipse1 based on the new renderer and cdk trunk. To test: Open 2DStructureView in Bioclipse2, add an SDF file to workspace, expand it in navigator, click on any of its children.
14:16 CIA-30 bioclipse: ospjuth * r5492 /bioclipse2/trunk/plugins/net.bioclipse.c​dk10.jchempaint/src/net/bioclipse/cdk10/j​chempaint/ui/editor/JalviewEditor.java: Removed unused editor.
14:56 CIA-30 bioclipse: ospjuth * r5493 /bioclipse2/trunk/plugins/net.bioclipse.cdk.ui/ (8 files in 3 dirs): Started working on a SDFEditor wit ha StructureTableView on one page.
15:53 CIA-30 bioclipse: jonalv * r5494 /bioclipse2/trunk/plugins/net.bioc​lipse.core/src/net/bioclipse/core/​business/BioclipseException.java: added a constructor for giving a cause to a BioclipseException
15:55 CIA-30 bioclipse: jonalv * r5495 /bioclipse2/trunk/plugins/net.bioclipse.str​ucturedb.tests/tests/net/bioclipse/structur​edb/business/StructuredbManagerTest.java: Wrote test for persisting two structures to a database through the manager and the retrieve them both by name and all at once. For the moment it fails due to CDK trouble though... :(
17:07 rojasm joined #cdk
17:07 CIA-30 cdk: miguelrojasch * r10671 /cdk/branches/miguelrojasch-CMLReact/src/ (2 files in 2 dirs): moved the ReactionScheme in the cdk package. Problems with the DefaultChemObjectBuilder
17:11 CIA-30 cdk: miguelrojasch * r10672 /cdk/branches/miguelrojasch-CMLReact/src/da​ta/cml/reaction.ArginineFragmentation.cml: new cml containing a reactionscheme and a list of molecules together.
17:25 CIA-30 cdk: miguelrojasch * r10673 /cdk/branches/miguelrojasch-CMLReact/sr​c/main/org/openscience/cdk/tools/manipu​lator/ReactionSchemeManipulator.java: As ReactionSet the manipulator of the ReactionScheme moved to the module standard
17:26 CIA-30 cdk: miguelrojasch * r10674 /cdk/branches/miguelrojasch-CMLReac​t/src/META-INF/libiocml.cdkdepends: The libiocml.cdkdepends needs the formula jar to parser correctly the cmlFormula
17:30 CIA-30 cdk: miguelrojasch * r10675 /cdk/branches/miguelrojasch-CMLReact/src/ (10 files in 10 dirs): Update all classes to the new position of the ReactionScheme in cdk.package
17:39 CIA-30 cdk: miguelrojasch * r10676 /cdk/branches/miguelrojasch-CMLReact/src/tes​t/org/openscience/cdk/ReactionSetTest.java: Added parameters to Iterator
17:40 CIA-30 cdk: miguelrojasch * r10677 /cdk/branches/miguelrojasch-CMLReact/src/test​/org/openscience/cdk/ReactionSchemeTest.java: changed to module test-standard
18:20 CIA-30 cdk: miguelrojasch * r10678 /cdk/branches/miguelrojasch-CMLReact/s​rc/META-INF/test-libiocml.cdkdepends: The test-libiocml.cdkdepends needs the formula jar to parser correctly the cmlFormula
18:21 CIA-30 cdk: miguelrojasch * r10679 /cdk/branches/miguelrojasch-CMLReact/​src/test/org/openscience/cdk/formula/​MolecularFormulaManipulatorTest.java: Merged from cdk/trunk/, rev: 10677
18:22 CIA-30 cdk: miguelrojasch * r10680 /cdk/branches/miguelrojasch-CMLReact/​src/test/org/openscience/cdk/formula/​MolecularFormulaManipulatorTest.java: corrected conflicts
19:43 CIA-30 cdk: miguelrojasch * r10681 /cdk/branches/miguelrojasch-charges/: deleting the charges.branch to update with CMLReaction.branch
19:46 CIA-30 cdk: miguelrojasch * r10682 /cdk/branches/miguelrojasch-charges/: cp a new miguelrojasch-charges in branches from CMLReact
20:02 CIA-30 cdk: miguelrojasch * r10683 /cdk/branches/miguelrojasch-charges/.project: changing name project
21:36 CIA-30 cdk: miguelrojasch * r10684 /cdk/branches/ (2 files in 2 dirs): changed the value of the result which should be expected 4 resonances structures
23:01 CIA-30 cdk: rajarshi * r10685 /cdk/trunk/src/main/org/openscience/cdk/qsar/desc​riptors/molecular/MomentOfInertiaDescriptor.java: Throw an exception if no 3D coordinates are available

| Channels | #cdk index | Today | | Search | Google Search | Plain-Text | summary