Camelia, the Perl 6 bug

IRC log for #cdk, 2008-04-29

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All times shown according to UTC.

Time Nick Message
05:14 jbrefort joined #cdk
06:19 CIA-30 jmol: hansonr * r9337 /trunk/Jmol/src/org/jmol/ (10 files in 3 dirs): version=11.5.32 # bug fix: added connections do not save properly in state
06:34 rojasm joined #cdk
06:46 CIA-30 jmol: hansonr * r9338 /trunk/Jmol/src/org/jmol/ (7 files in 3 dirs): version=11.5.32 # bug fix: added connections do not save properly in state
07:11 malick joined #cdk
07:22 jpansanel moin
07:40 jonalv joined #cdk
08:09 CIA-30 cdk: miguelrojasch * r10716 /cdk/branches/miguelrojasch-charges/src/​main/org/openscience/cdk/qsar/descriptor​s/atomic/PartialPiChargeDescriptor.java: added the correct return value. The ln checker initiated one time.
08:43 thomas_ku joined #cdk
08:43 thomas_ku moin
08:46 CIA-30 cdk: miguelrojasch * r10717 /cdk/branches/miguelrojasch-charges​/src/main/org/openscience/cdk/tools​/StructureResonanceGenerator.java: increase the maximal number of resonance structure to 50
08:54 CIA-30 bioclipse: carl_masak * r5530 /bioclipse2/trunk/plugins/net.biocli​pse.cdk10.jchempaint/src/net/bioclip​se/cdk10/jchempaint/Activator.java:
08:54 CIA-30 bioclipse: [Activator.java]
08:54 CIA-30 bioclipse: * typo
09:01 egonw joined #cdk
09:07 CIA-30 bioclipse: jonalv * r5531 /bioclipse2/trunk/plugins/ (3 files in 3 dirs):
09:07 CIA-30 bioclipse: Fixed the last DAO test. All DAO tests and all internal manager tests now
09:07 CIA-30 bioclipse: passes. Problem left is with running multiple local database instances which
09:07 CIA-30 bioclipse: might not be worth it. Also no SDF file parsing done yet. And will also need
09:07 CIA-30 bioclipse: some sort of lazy loading of huge amounts of structures from the database
10:22 CIA-30 cdk: miguelrojasch * r10718 /cdk/branches/miguelrojasch-charges/​src/test/org/openscience/cdk/tools/S​tructureResonanceGeneratorTest.java: New test for 1-fluoro-2-methylben to extract the containers
11:12 CIA-30 bioclipse: ospjuth * r5532 /bioclipse2/trunk/plugins/net.bioclipse.ui/src/​net/bioclipse/ui/views/ActionHistoryView.java: Remove listener on dispose.
11:39 CIA-30 cdk: miguelrojasch * r10719 /cdk/branches/miguelrojasch-charges/​src/test/org/openscience/cdk/tools/S​tructureResonanceGeneratorTest.java: added forgot bond checks. Looking symmetry.
12:23 CIA-30 bioclipse: ospjuth * r5533 /bioclipse2/trunk/plugins/net.bioclipse.ser​vices/src/net/bioclipse/services/business/ (3 files): Services are run with generic Object as input, not List<Object>. Resource extraction pushed to manager instead of in DropAdapter.
12:23 CIA-30 bioclipse: ospjuth * r5534 /bioclipse2/trunk/plugins/net.bioclip​se.services/src/net/bioclipse/service​s/views/ServiceViewDropAdapter.java: Updated the dropAdapter accordingly.
13:58 carsten joined #cdk
14:18 CIA-30 jmol: hansonr * r9339 /trunk/Jmol/src/org/jmol/ (adapter/readers/cifpdb/PdbReader.java viewer/Jmol.properties): version=11.5.32 # bug fix: load FILTER "BIOMOLECULE 1;APPLY SYMMETRY" does not read second line of chain list
14:22 CIA-30 bioclipse: ospjuth * r5535 /bioclipse2/trunk/plugins/net.bioclipse.ser​vices/src/net/bioclipse/services/business/ (ServiceManager.java ServiceManagerHelper.java): Fixed unwrapping lists and selections + parsing of Files in drag and drop depending on accepted inputs in service.
14:35 CIA-30 cdk: miguelrojasch * r10720 /cdk/branches/miguelrojasch-charges/src/ (2 files in 2 dirs): the aromaticity important factor for obtaining the correct number of resonance structures
14:45 CIA-30 bioclipse: ospjuth * r5536 /bioclipse2/trunk/plugins/net.bioclipse.ser​vices/src/net/bioclipse/services/business/ (IServiceManager.java ServiceManager.java): Added scriptable version of services.run(String name, Object input).
15:00 CIA-30 bioclipse: jonalv * r5537 /bioclipse2/trunk/plugins/ (5 files in 3 dirs): Added test.sdf file to the structuredb tests and more fighting with hsqldb. No sucess yet on tht front though...
15:06 egonw jpansanel: around?
15:20 CIA-30 bioclipse: ospjuth * r5538 /bioclipse2/trunk/plugins/net.bioclipse.ser​vices/src/net/bioclipse/services/business/ (ServiceManager.java ServiceManagerHelper.java): Tried to parse String inputs as IResource if accepted input is IResource.
15:26 CIA-30 bioclipse: ospjuth * r5539 /bioclipse2/trunk/plugins/net.bioclips​e.services/src/net/bioclipse/services/ (2 files in 2 dirs): Deprecated service.run() that did not take service name as input. All for better recording. Also made DropAdapter use new run(String servicename, Object input).
15:37 CIA-30 cdk: miguelrojasch * r10721 /cdk/branches/miguelrojasch-charges/src/ (2 files in 2 dirs): added method to add the number maximal of resonance structures to be found and tests
15:43 CIA-30 cdk: miguelrojasch * r10722 /cdk/branches/miguelrojasch-charges/src/ (2 files in 2 dirs): solved problem given different result according how is created the container. Added more tests. Added inchi ID for all compounds. Pi charges calculations don't given anymore null results.
18:10 malick left #cdk
19:18 rojasm joined #cdk
20:11 jbrefort joined #cdk
20:14 CIA-30 jmol: nicove * r9340 /trunk/Jmol-extensions/wiki/MediaWiki/ (Jmol.body.php Jmol.php): Fix for MediaWiki 1.12
20:48 CIA-30 jmol: hansonr * r9341 /trunk/Jmol/src/org/jmol/adapter​/readers/cifpdb/PdbReader.java:
21:20 CIA-30 jmol: nicove * r9342 /trunk/Jmol/src/org/jmol/viewer/Jmol.properties: Version
21:47 CIA-30 jmol: nicove * r9343 /trunk/Jmol/src/org/jmol/translation/ (Jmol/Jmol-pt_BR.po JmolApplet/JmolApplet-pt_BR.po): Translation: Brazilian Portuguese (pt_BR)
22:23 CIA-30 cdk: miguelrojasch * r10723 /cdk/branches/miguelrojasch-charges/src/tes​t/org/openscience/cdk/qsar/descriptors/atom​ic/PartialSigmaChargeDescriptorTest.java: added Inchi ID for the compounds. Substitution of smiles for IMolecule object creating the compound.
22:46 CIA-30 cdk: miguelrojasch * r10724 /cdk/branches/miguelrojasch-charges/src/test/​org/openscience/cdk/qsar/descriptors/atomic/ (2 files): added Inchi ID for the compounds. Substitution of smiles for IMolecule object creating the compound.

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