Camelia, the Perl 6 bug

IRC log for #cdk, 2008-05-03

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All times shown according to UTC.

Time Nick Message
04:27 jbrefort joined #cdk
06:13 egonw joined #cdk
06:40 CIA-30 cdk: egonw * r10772 /cdk/trunk/tools/checkSVNKeywords.pl: Added tool to detect and fix missing svn:keywords Revision Author Id and Date
06:41 CIA-30 cdk: egonw * r10773 /cdk/trunk/src/main/org/openscience/cdk/ (4 files in 3 dirs): Tested new checkSVNKeywords.pl on the core module
06:50 CIA-30 cdk: egonw * r10774 /cdk/trunk/src/main/org/openscience/cdk/ (303 files in 43 dirs): Fixed svn:keywords for many other modules
06:57 CIA-30 cdk: egonw * r10775 /cdk/trunk/src/test/org/openscience/cdk/ (287 files in 47 dirs): Fixed svn:keywords for many test modules
07:21 CIA-30 cdk: egonw * r10776 /cdk/trunk/src/ (5 files in 2 dirs): Removed old controller
07:41 CIA-30 cdk: egonw * r10777 /cdk/trunk/src/ (4 files in 3 dirs): Cleaned tests: no longer refers to the GeometryToolsInternalCoordinatesTest; moved all those tests to GeometryToolsTest
09:20 CIA-30 cdk: egonw * r10778 /cdk/trunk/tools/extractTestStats.bsh: Fixed running without arguments
09:43 CIA-30 cdk: egonw * r10779 /cdk/trunk/src/main/org/openscience/cdk/ (AtomContainer.java Reaction.java): Made grow methods private
10:51 CIA-30 cdk: egonw * r10780 /cdk/trunk/src/main/org/openscience​/cdk/config/data/cdk_atomtypes.xml: Updated XSLT location for svn hierarchy restructuring
10:54 jpansane1 joined #cdk
10:57 jpansanel joined #cdk
12:03 carsten joined #cdk
12:05 CIA-30 cdk: egonw * r10781 /cdk/trunk/src/main/org/openscience​/cdk/config/data/cdk_atomtypes.xml: Fixed name example compound
12:06 CIA-30 cdk: egonw * r10782 /cdk/trunk/src/main/org/openscienc​e/cdk/io/CDKSourceCodeWriter.java: Added missing typing of bond orders
12:09 CIA-30 cdk: egonw * r10783 /cdk/trunk/src/ (2 files in 2 dirs): Fixed perception of (methylsulfinimidoyl)methane like compounds
14:15 CIA-30 cdk: egonw * r10784 /cdk/trunk/src/test/org/openscience/cdk/atomtype/ (AbstractAtomTypeTest.java CDKAtomTypeMatcherTest.java):
14:15 CIA-30 cdk: Refactored/fixed atom type count testing: placed testing for duplicate atoms in
14:15 CIA-30 cdk: separate test; better error reporting of more atom types are defined than tests;
14:15 CIA-30 cdk: don't assume that definedCount == testedCount makes everything fine
14:23 CIA-30 cdk: egonw * r10785 /cdk/trunk/src/ (3 files in 3 dirs): Added Al3+ and three-coordinate Al
14:50 CIA-30 cdk: egonw * r10786 /cdk/trunk/src/ (3 files in 3 dirs): Test all noble gases (easy)
14:55 CIA-30 cdk: egonw * r10787 /cdk/trunk/src/main/org/openscience​/cdk/config/data/cdk_atomtypes.xml: Set svn:keywords
14:56 CIA-30 cdk: egonw * r10788 /cdk/trunk/src/main/org/openscience​/cdk/config/data/cdk_atomtypes.xml: Typo
16:33 CIA-30 jmol: nicove * r9358 /trunk/Jmol-FAH/projects/ (p4519.xyz.gz p4520.xyz.gz): Folding@Home
17:12 swolf joined #cdk
18:52 egonw joined #cdk
18:58 swolf joined #cdk
18:59 egonw hi swolf
18:59 swolf hi egonw :)
18:59 egonw you're astronomist?
19:00 swolf i am student from steffen neumann (Germany IPB Halle)
19:00 egonw oh :( that's embarassing...
19:00 egonw we met in Halle?
19:00 swolf i am writing my diplom there
19:00 swolf no you probably met michael
19:00 egonw yeah, I met him...
19:00 egonw phew...
19:00 swolf he is the guy with biomoby
19:00 egonw you're name did not ring a bell :)
19:01 egonw steffen might have mentioned it... don't remember
19:01 swolf i am the one with the tandem ms
19:01 egonw ok
19:01 swolf steffen told me about your ideas with the fingerprint and nmrshiftdb
19:02 swolf but i am not that far yet.....
19:03 egonw ah, right...
19:03 swolf but i have a question ... if u dont mind
19:04 swolf i dont see the replies
19:57 CIA-30 cdk: egonw * r10789 /cdk/trunk/build.xml: Added missing autogenerated SMARTS file to the clean task (closes #1894890)
20:30 CIA-30 cdk: egonw * r10790 /cdk/trunk/src/ (4 files in 4 dirs): Moved method to better location (closes #1956606)
20:31 CIA-30 cdk: egonw * r10791 /cdk/trunk/tools/pubchem2unittest.bsh: Added PubChem tool, which I apparently forgot to commit
21:01 CIA-30 cdk: egonw * r10792 /cdk/trunk/src/main/org/openscien​ce/cdk/smiles/SmilesParser.java: Fixed parsing of +1 charged atoms (closes #1719287)
21:28 CIA-30 cdk: egonw * r10793 /cdk/branches/cdk-egonw-originalstructgen/: Made a copy of the original structgen code: let's see how that behaved
22:35 CIA-30 cdk: egonw * r10794 /cdk/branches/cdk-egonw-originalstructgen/src/o​rg/openscience/cdk/test/iupac/ParserTest.java: Removed class I have no need for, and which contained a weird UTF8 char
22:35 CIA-30 cdk: egonw * r10795 /cdk/branches/cdk-egonw-or​iginalstructgen/build.xml: Allow building with recent compilers
22:37 CIA-30 cdk: egonw * r10796 /cdk/branches/cdk-egonw-originalstructgen/ (.classpath .project): Added Eclipse project stuff
22:48 CIA-30 cdk: egonw * r10797 /cdk/branches/cdk-egonw-originalstructgen/ (34 files in 19 dirs): Removed much code unrelated to structgen, to clean up compiling in Eclipse
23:07 CIA-30 cdk: egonw * r10798 /cdk/branches/cdk-egonw-originalstructgen/sr​c/org/openscience/cdk/test/structgen/determi​nistic/GENMDeterministicGeneratorTest.java: Backported a number of tests from trunk
23:13 CIA-30 cdk: egonw * r10799 /cdk/branches/cdk-egonw-originalstructgen/ (2 files in 2 dirs): Added test for bug 1744463: they fail here too
23:14 CIA-30 cdk: egonw * r10800 /cdk/trunk/src/main/org/openscience/cdk/f​ormula/MolecularFormulaManipulator.java: Added comment on isotopic mass expected to be set beforehand
23:14 CIA-30 cdk: egonw * r10801 /cdk/trunk/src/test/org/openscience/cdk/structgen/​deterministic/GENMDeterministicGeneratorTest.java: Added unit tests for bug report #1744463
23:42 CIA-30 cdk: egonw * r10802 /cdk/trunk/src/META-INF/te​st-qsaratomic.cdkdepends: Added missing deps

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