Camelia, the Perl 6 bug

IRC log for #cdk, 2008-05-08

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All times shown according to UTC.

Time Nick Message
01:16 Andreas1 joined #cdk
05:00 thomas_ku moin
05:34 rojasm moin
05:43 CIA-31 cdk: miguelrojasch * r10923 /cdk/branches/miguelrojasch-IP/.project: Changed name project to the correct one
05:56 jbrefort joined #cdk
06:02 CIA-31 cdk: miguelrojasch * r10924 /cdk/branches/miguelrojasch-IP/src/m​ain/org/openscience/cdk/qsar/descrip​tors/atomic/IPAtomicDescriptor.java: Added IPAtomicDescriptor as AbstractAtomicDescriptor
07:01 CIA-31 cdk: miguelrojasch * r10925 /cdk/branches/miguelrojasch-IP/src/m​ain/org/openscience/cdk/qsar/descrip​tors/atomic/IPAtomicDescriptor.java: started concept grouping funtional groups
07:04 egonw joined #cdk
07:05 egonw moin
07:13 egonw joined #cdk
07:16 Topic for #cdkis now The Chemistry Development Kit (http://cdk.sf.net) | JUnit: 6043, 64 fails + 59 errors (2.04%) | CDK 1.0.x TODO: see http://cdk.sf.net/wiki/ | Logs at http://moritz.faui2k3.org/​irclog/out.pl?channel=cdk | CDK News paper online on pharmacophores
07:17 Topic for #cdkis now The Chemistry Development Kit (http://cdk.sf.net) | JUnit: 6043, 64 fails + 59 errors (2.04%) | CDK 1.0.x TODO: see http://cdk.sf.net/wiki/ | Logs at http://moritz.faui2k3.org/​irclog/out.pl?channel=cdk | CDK News paper online on pharmacophores: http://www.cdknews.org/
07:25 rojasm joined #cdk
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07:44 rojas1 joined #cdk
07:45 rojasm left #cdk
07:46 rojas1 moin
07:47 rojas1 egonw: could you have a look when you have time for some discussion
07:47 egonw rojas1: but not today or tomorrow...
07:47 rojas1 to the last commit
07:47 rojas1 ok
07:47 egonw got two presentations to give today and tomorrow
07:47 rojas1 not problem
07:47 rojas1 upps
07:48 rojas1 so the next week
07:48 egonw please add things like "// FIXME: IP: egonw, please check this and that..." and "// TODO: IP: egonw, please do this..." to the branch
07:48 rojas1 presentations where?
07:48 egonw in our group on MetWare and tomorrow in Almelo on my PhD work
07:49 rojas1 oh nice
07:50 CIA-31 bioclipse: jonalv * r5597 /bioclipse2/trunk/plugins/ (2 files in 2 dirs): new name of local user is "local" instead of "admin"
07:50 * egonw moves into panic mode
07:57 masak joined #cdk
08:40 CIA-31 bioclipse: carl_masak * r5598 /bioclipse2/trunk/plugins/net.bioclipse​.structuredb/src/net/bioclipse/structur​edb/business/IStructuredbManager.java: [IStructuredbManager.java] removed some more tabs
09:01 CIA-31 bioclipse: jonalv * r5599 /bioclipse2/trunk/plugins/net.bioclipse.ui/src/n​et/bioclipse/ui/views/ScriptingConsoleView.java: switched from update to redraw. It seems to work better.
09:03 CIA-31 bioclipse: jonalv * r5600 /bioclipse2/trunk/plugins/net.bioclip​se.structuredb/META-INF/MANIFEST.MF: imported stuff needed to make structuredb go. Now it starts from within Bioclipse! (still no gui)
09:30 CIA-31 cdk: thomaskuhn * r10926 /cdk-taverna-paper/trunk/cd​k-taverna/bmc_article.tex: A bit for more text
09:31 CIA-31 cdk: thomaskuhn * r10927 /cdk-taverna-paper/trunk/cdk-taverna/ (4 files in 2 dirs): Add another example workflow and pics of the workflow
11:00 CIA-31 bioclipse: jonalv * r5601 /bioclipse2/trunk/plugins/ (2 files in 2 dirs): teardown for strucutredbManager tests now removes database files
12:09 CIA-31 bioclipse: jonalv * r5602 /bioclipse2/trunk/plugins/ (3 files in 2 dirs): Wrote tests for loading old structuredb instances when starting and for deleting instances
12:28 CIA-31 bioclipse: carl_masak * r5603 /bioclipse2/trunk/plugins/net.bioclipse.scripting​/src/net/bioclipse/scripting/JsEnvironment.java: [JsEnvironment] pretty printing for List types
13:21 egonw rojas1: ping
13:38 rojas1 yes egon
13:40 rojas1 egonw ping
13:41 egonw I got until 16:00 or so... so, ask away...
13:42 rojas1 my question was more how to organize the IPDescriptor
13:43 rojas1 at the moment I try to use the hose code too
13:43 rojas1 and not only descriptors
13:43 rojas1 but the question was ...
13:43 rojas1 I think now to complicate
13:44 rojas1 I will email you
13:44 rojas1 so I think I can explain me better
13:44 rojas1 But the general problem is how to organize the groups
13:45 egonw SMARTS
13:45 rojas1 which I would like to do more flexible as possible
13:45 egonw if you check the unit results... it's much down
13:45 egonw remaining involves a missing feature, and aromaticity for a test compound not properly detected (so not a SMARTS fail)
13:45 rojas1 ok
13:45 rojas1 But I would like create a class for each group doing
13:46 rojas1 and then that you could load what you are interested
13:46 rojas1 like functional groups definition
13:48 egonw ok, you'll have to explain that in an elaborate email
13:48 rojas1 I think so
13:48 rojas1 to night better
15:09 CIA-31 cdk: miguelrojasch * r10928 /cdk/branches/miguelrojasch-IP/src/ (5 files in 4 dirs): Second step added HOSECode
16:13 Andreas1 joined #cdk
19:20 carsten joined #cdk
19:43 rojasm joined #cdk
20:10 egonw joined #cdk
21:37 CIA-31 cdk: rajarshi * r10929 /cdk/trunk/src/main/org/opensc​ience/cdk/AtomContainer.java: Fixed some minor Javadoc issues and cleaned up some code to use 1.5 idioms

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