Camelia, the Perl 6 bug

IRC log for #cdk, 2008-05-11

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All times shown according to UTC.

Time Nick Message
05:00 egonw joined #cdk
05:23 CIA-31 cdk: egonw * r10955 /cdk/trunk/src/ (3 files in 2 dirs): Cleaned up API; and 'possbible'??? how did that get there?
05:29 CIA-31 cdk: egonw * r10956 /cdk/trunk/src/main/org/openscience/c​dk/geometry/IRDFWeightFunction.java: Easier to read code + typo
05:35 CIA-31 cdk: egonw * r10957 /cdk/trunk/src/main/org/opensci​ence/cdk/io/IChemObjectIO.java: Cleaner interfaces: requires the input of accepts now to be an IChemObject
06:06 CIA-31 cdk: egonw * r10958 /cdk/trunk/src/ (43 files in 12 dirs): Moved IAdductFormula, IMolecularFormula and IMolecularFormulaSet to the interfaces module
06:15 CIA-31 cdk: egonw * r10959 /cdk/trunk/src/ (6 files in 5 dirs): Made the Z field Integer, so NULL is supported
06:18 CIA-31 cdk: egonw * r10960 /cdk/trunk/src/main/org/openscience/cdk/ (10 files in 3 dirs): Made the electron count field Integer, so NULL is supported
06:19 egonw_ joined #cdk
06:20 CIA-31 cdk: egonw * r10961 /cdk/trunk/src/ (9 files in 4 dirs): Made the atom number field Integer, so NULL is supported
06:26 CIA-31 cdk: egonw * r10962 /cdk/trunk/src/main/org/openscience/cdk/ (8 files in 3 dirs): Converted a few more natives to Objects in the interfaces
06:27 CIA-31 cdk: egonw * r10963 /cdk/trunk/src/main/org/openscien​ce/cdk/interfaces/ILonePair.java: THe method is already defined in the parent interface IElectronContainer
06:31 CIA-31 cdk: egonw * r10964 /cdk/trunk/src/main/org/openscience/cdk/ (3 files in 3 dirs): IPDBAtom now uses Objects instead of natives too, to support NULL
06:35 CIA-31 cdk: egonw * r10965 /cdk/trunk/src/main/org/openscience/cdk/ (3 files in 3 dirs): IPDBStructure now uses Objects instead of natives too, to support NULL
07:19 CIA-31 cdk: egonw * r10966 /cdk/trunk/src/ (9 files in 4 dirs): Coefficients are now Object instead of native too, still for supporting NULLs
07:36 CIA-31 cdk: egonw * r10967 /cdk/trunk/src/ (9 files in 9 dirs): Replaced IReaction final statics for the reaction direction by an 'enum', using NULL for the DIRECTION_UNKNOWN static
08:55 carsten joined #cdk
11:45 steinbeck joined #cdk
12:20 edrin joined #cdk
12:36 CIA-31 jmol: nicove * r9373 /trunk/Jmol/src/org/jmol/translation/JmolApplet/ (14 files): Update of .po files
12:54 CIA-31 jmol: nicove * r9374 /trunk/Jmol/src/org/jmol/viewer/Jmol.properties: Version
13:11 egonw joined #cdk
13:12 egonw moin
13:12 * egonw is approving steinbeck's email to cdk-user
13:12 steinbeck Hi egonw
13:12 steinbeck very nice of egonw
13:13 steinbeck dunno what happened there
13:13 egonw done
13:13 egonw wrong email address
13:13 egonw wel... correct account I think
13:13 steinbeck yes, sure, but don't know how that happend :-)
13:13 egonw wrong alias
13:36 CIA-31 cdk: egonw * r10968 /cdk/trunk/src/test/org/openscience/cdk/ (IoCoverageTest.java modulesuites/MioTests.java): Enabled unit test coverage testing for the io module
14:01 CIA-31 cdk: egonw * r10969 /cdk/trunk/src/test/org/opensc​ience/cdk/PseudoAtomTest.java: Unusual unit test fixes: the previous expected values were in contradiction with the statements in the PseudoAtom source code... not sure why they did not fail in the past :(
14:02 CIA-31 cdk: egonw * r10970 /cdk/trunk/src/main/org/open​science/cdk/PseudoAtom.java: Fixed signature... this is one of those particular cases where that Override annotation is actually very useful
14:05 CIA-31 cdk: egonw * r10971 /cdk/trunk/src/ (6 files in 6 dirs): Fixed a number of NPEs, caused by the full move to NULL defaults for data class fields
14:05 egonw it's just amazing how every API clean up highlights new bugs in the code
14:05 egonw even as simple as those int -> Integer thingies...
14:06 egonw and not talking about the NPE...
14:06 egonw but true bugs, also present in the 'int' code, but which did not manifest itself clearly until such a transition...
14:07 egonw steinbeck: btw, did you notice the development speed at this moment...
14:07 egonw ?
14:08 egonw almost 10% past the 10.000th commit already
14:13 steinbeck yes nice indeed, Egon!
14:19 egonw the branch thingy works very nice too...
14:19 egonw branching back into trunk is a bit tricky
14:19 egonw if one keep his branch in synch with trunk to some extend...
14:19 egonw which tends to be useful
14:19 egonw but SVN cannot deal with that too well
14:21 * egonw will leave in 5 minutes or so
14:22 CIA-31 cdk: egonw * r10972 /cdk/trunk/src/test/org/opensc​ience/cdk/IoCoverageTest.java: Fixed module
15:04 CIA-31 cdk: egonw * r10973 /cdk/trunk/src/main/org/openscience/cdk/ (libio/cml/Convertor.java smiles/SmilesGenerator.java): Fixed two NPE sources
16:45 egonw joined #cdk
16:54 CIA-31 cdk: egonw * r10974 /cdk/trunk/src/test/org/openscience/cdk/ (4 files in 3 dirs): Typo: seUp -> setUp
18:55 egonw joined #cdk
19:22 egonw_ joined #cdk
19:28 CIA-31 cdk: egonw * r10975 /cdk/trunk/src/main/org/openscience/cdk/f​ormula/MolecularFormulaManipulator.java: Return 0.0 if not all masses are preset
19:31 CIA-31 cdk: egonw * r10976 /cdk/trunk/src/test/org/openscience/cdk/for​mula/MolecularFormulaManipulatorTest.java: Cleaned up code (split up tests); zero is returned, not -1
19:39 CIA-31 cdk: egonw * r10977 /cdk/trunk/src/main/org/openscience/cdk/iso​morphism/matchers/smarts/HydrogenAtom.java: Fixed a NPE
20:27 CIA-31 cdk: egonw * r10978 /cdk/trunk/src/test/org/openscience/cdk/ (9 files in 2 dirs): Updated test method names to new API of data classes
20:31 edrin joined #cdk
22:30 rojasm joined #cdk

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