Camelia, the Perl 6 bug

IRC log for #cdk, 2008-05-20

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All times shown according to UTC.

Time Nick Message
05:24 egonw joined #cdk
05:47 jbrefort joined #cdk
05:56 CIA-31 cdk: egonw * r11073 /cdk/trunk/ (javadoc.xml pmd-migrating.xml pmd-unused.xml pmd.xml): Removed reference to the biojava module (which no longer exists), hopefully solving the nightly problems
06:13 malick joined #cdk
06:26 thomas_ku joined #cdk
06:26 thomas_ku moin
06:31 rojasm joined #cdk
06:34 rojasm moin
06:43 CIA-31 cdk: miguelrojasch * r11074 /cdk/branches/miguelrojasch-IP/src/ (2 files in 2 dirs): Removed prediction of the ip using HOSECode. Not successful access to
06:55 CIA-31 cdk: miguelrojasch * r11075 /cdk/branches/miguelrojasch-IP/src/te​st/org/openscience/cdk/modulesuites/ (MqsarbondTests.java MqsarmolecularTests.java): Closed the bug #1860497. Not dependencies between Descriptors
07:07 CIA-31 cdk: miguelrojasch * r11076 /cdk/branches/miguelrojasch-IP/src/ (2 files in 2 dirs): The calculation of the energy in ionization potential only applied for double and triple bonds
07:27 egonw joined #cdk
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07:50 CIA-31 bioclipse: jonalv * r5644 /bioclipse2/trunk/plugins/net.bioclipse.cdk/ (.classpath META-INF/MANIFEST.MF): Removed things from cdk manifest and updated classpath in order to keep up with changes in cdk. Hopes nothing in Bioclipse was depending on those parts...
10:42 JimDowning joined #cdk
11:08 JimDowning Hi all,
11:08 JimDowning Do you run continuous integration for CDK?
11:26 Andreas1 Hi
11:26 Andreas1 JimDowning: I don't really understand your question.
11:44 CIA-31 bioclipse: jonalv * r5645 /bioclipse2/trunk/plugins/ (2 files in 2 dirs): Fixed addstrucutrefromsdf in structuredb. It no longer repersists all structures already in the folder each time it persists a new structure in the folder(ooops) btw: It is much quicker now... :)
11:49 CIA-31 cdk: miguelrojasch * r11077 /cdk/branches/miguelrojasch-IP/src/ (12 files in 2 dirs): Added missing test for the module charges
12:07 jonalv will the smiles generator "get stuck" almost forever if I give it a too large structure?
12:17 JimDowning Andreas1: With something like Gump / Cruise Control. Tools that check out the latest code from each project, and compile and test them against each other.
12:36 JimDowning left #cdk
12:37 CIA-31 cdk: miguelrojasch * r11078 /cdk/branches/miguelrojasch-IP/src/ (6 files in 4 dirs): modified the name of the class from StabilizationCharge to StabilizationCharges
13:08 carsten joined #cdk
13:34 masak joined #cdk
14:00 CIA-31 cdk: miguelrojasch * r11079 /cdk/branches/miguelrojasch-IP/src/ (2 files in 2 dirs): added missed test for atomtype plus.radical
14:21 CIA-31 bioclipse: jonalv * r5646 /bioclipse2/trunk/plugins/ (9 files in 6 dirs): Worked around one possible memory leak while importing sdf files in structuredb. It doesn't seem to be the only onw though since it still dies complaining about OUTOFMEMORY when running an SDF file of about 6 MB
15:00 rojasm joined #cdk
15:05 JimDowning joined #cdk
15:05 JimDowning left #cdk
16:05 malick left #cdk
16:05 egonw joined #cdk
16:14 CIA-31 cdk: egonw * r11080 /cdk/trunk/ (javadoc.xml pmd-migrating.xml pmd-unused.xml pmd.xml): Fixed Nightly issues
16:54 CIA-31 jmol: hansonr * r9397 /trunk/Jmol/src/org/jmol/ (7 files in 5 dirs): (log message trimmed)
16:54 CIA-31 jmol: 11.5.38 VERSION -- select :c, draw ARROW, CIRCLE, VECTOR, ">text"
16:54 CIA-31 jmol: # bug fix: select n-m:c chain selection inappropriately case sensitive
16:54 CIA-31 jmol: # bug fix: draw ARROW {atom center} {xyz} draws arrow the wrong way
16:54 CIA-31 jmol: # bug fix: draw CIRCLE for multiple models
16:54 CIA-31 jmol: # new feature: draw CIRCLE [FILL | MESH NOFILL] more intuitive open/filling syntax
16:54 CIA-31 jmol: # new feature: draw VECTOR {atom center} {dx dy dz}
19:57 rojasm joined #cdk
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20:21 mansu_ joined #cdk
20:28 mansu_ hi all
20:28 mansu_ i am interested in looking at the unit tests for cdk
20:28 mansu_ where should I be looking?
20:59 rojasm joined #cdk
22:55 CIA-31 jmol: hansonr * r9398 /trunk/Jmol/src/org/ (11 files in 5 dirs): (log message trimmed)
22:55 CIA-31 jmol: version=11.5.38
22:55 CIA-31 jmol: # bug fix: select n-m:c chain selection inappropriately case sensitive
22:55 CIA-31 jmol: # bug fix: draw ARROW {atom center} {xyz} draws arrow the wrong way
22:55 CIA-31 jmol: # bug fix: draw CIRCLE for multiple models
22:55 CIA-31 jmol: # bug fix: application -- "make crystal..." menu item does nothing -- removed
22:55 CIA-31 jmol: # bug fix: zap of quaternion also zaps model inappropriately

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