Camelia, the Perl 6 bug

IRC log for #cdk, 2008-06-03

| Channels | #cdk index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
03:12 egonw joined #cdk
03:44 CIA-31 cdk: egonw * r11261 /cdk/trunk/src/main/org/openscienc​e/cdk/smiles/SmilesGenerator.java: Removed obsolete note on the ring finder, and added illustrative example
04:53 CIA-31 cdk: egonw * r11262 /cdk/trunk/src/test/org/openscience/cdk/ (5 files): Added testing of cloning using new diff tools
04:53 CIA-31 cdk: egonw * r11263 /cdk/trunk/src/test/org/openscience/cdk/to​ols/diff/AbstractChemObjectDiffTest.java: Proper implementation of test
04:53 CIA-31 cdk: egonw * r11264 /cdk/trunk/src/test/org/openscience/cdk/to​ols/diff/AbstractChemObjectDiffTest.java: Added test method for diff(Point3d, Point3d)
04:54 CIA-31 cdk: egonw * r11265 /cdk/trunk/src/main/org/openscience/cdk/​tools/diff/AbstractChemObjectDiff.java: Added missing annotation
04:54 CIA-31 cdk: egonw * r11266 /cdk/trunk/src/main/org/openscience/cdk/​tools/diff/AbstractChemObjectDiff.java: Fixed comparing Point2d's
04:54 CIA-31 cdk: egonw * r11267 /cdk/trunk/src/test/org/openscience/cdk/to​ols/diff/AbstractChemObjectDiffTest.java: Added tests for situations where one of the two objects is null (and fixed a few labels)
04:55 CIA-31 cdk: egonw * r11268 /cdk/trunk/src/main/org/openscience/cdk/​tools/diff/AbstractChemObjectDiff.java: Now properly deals with situations where only one input IChemObject == null
04:55 CIA-31 cdk: egonw * r11269 /cdk/trunk/src/test/org/openscience/cdk/qsar/​descriptors/atomic/AtomicDescriptorTest.java: Use the new diff module, for easier to understand unit test fails
04:55 CIA-31 cdk: egonw * r11270 /cdk/trunk/src/test/org/openscience/cdk/to​ols/diff/AbstractChemObjectDiffTest.java: Added assertions to test of the field name ends up in the results string too
04:57 CIA-31 jmol: hansonr * r9448 /trunk/Jmol/src/org/jmol/ (shapespecial/Draw.java viewer/Jmol.properties):
04:57 CIA-31 jmol: 11.5.39 VERSION
04:57 CIA-31 jmol: # bug fix: model-based drawing in multiple-model mode using an
04:57 CIA-31 jmol: # array of points to load causes null pointer exception:
04:57 CIA-31 jmol: # load cyclohexane_movie.xyz;pts = {C5}.split();print pts;draw @{pts.xyz.sub({1 0 0})} "X"
05:02 bag joined #cdk
05:12 CIA-31 cdk: egonw * r11271 /cdk/trunk/src/main/org/openscience/cdk/​tools/diff/AbstractChemObjectDiff.java: Fixed field name ending up in result string
05:21 CIA-31 jmol: hansonr * r9449 /trunk/Jmol/src/org/jmol/ (api/JmolSimpleViewer.java viewer/Jmol.properties): version=11.5.39 # bug fix: JmolSimpleViewer caused null pointer exception -- needed setAppletContext()
05:21 jbrefort joined #cdk
05:36 CIA-31 jmol: hansonr * r9450 /trunk/Jmol/ (3 files in 2 dirs):
05:36 CIA-31 jmol: version=11.5.39 # bug fix: JmolSimpleViewer caused null pointer exception -- needed setAppletContext()
05:36 CIA-31 jmol: more comments
05:43 CIA-31 jmol: hansonr * r9451 /trunk/Jmol/src/org/jmol/ (api/JmolViewer.java viewer/Viewer.java): version=11.5.39 # bug fix: JmolViewer comments
06:14 jonalv joined #cdk
06:54 thomas_ku joined #cdk
07:07 masak joined #cdk
07:18 rojasm joined #cdk
07:24 egonw joined #cdk
08:16 CIA-31 cdk: jonalv * r11272 /cdk/trunk/META-INF/MANIFEST.MF: Bundle now exports org.openscience.cdk.smiles.smarts
08:18 jonalv egonw: Have I missunderstood how SMARTS matching works? Shouldn't a molecule created from SMILEs match corresponding SMILES sequence when given in the SMARTS query?
08:19 egonw umm.. I thought so...
08:19 egonw please email your code to cdk-user@
08:19 egonw so that Rajarshi can shed some light on it
08:19 jonalv I will just double check it first :)
08:37 jonalv newbe question: Why does MoleculeFactory.makeIndole() return a Molecule and not an IMolecule?
08:39 jbrefort joined #cdk
08:50 jonalv_ joined #cdk
09:20 shk3 joined #cdk
09:29 egonw hi shk3
09:30 egonw ha, nice to see:
09:30 egonw shk3@nat8012.ebi.ac.uk
09:33 shk3 hi egon
09:35 shk3 just checking out bioclipse
09:36 egonw 1 or 2?
09:37 shk3 1
09:37 * egonw will relocate to Biometris...
09:37 shk3 I need to get the nmrshiftdb application exported
09:37 egonw should be back online in about 15 mins
09:37 egonw ah, nice
09:37 shk3 first thing to do reallz
09:37 shk3 y
09:37 egonw I assume you started yesterday?
09:37 egonw where are you living? Cambridge?
09:40 shk3 yes
09:40 shk3 still looking right now
09:40 shk3 for something
09:41 shk3 (or I found something, but its not yet ready)
09:42 egonw well, good luck hunting!
10:12 egonw joined #cdk
14:34 egonw joined #cdk
14:35 jpansanel moin
16:38 jbrefort joined #cdk
16:42 rojasm joined #cdk
17:35 egonw joined #cdk
17:47 carsten joined #cdk
17:48 egonw hi carsten
17:48 egonw running 4.1 already? I'm anxiously waiting for the ubuntu hardy debs
17:48 egonw .beta
17:48 carsten moin moin
17:48 carsten egonw: no, still 3.5.9
17:58 egonw well, I am on my laptop too...
18:10 CIA-31 jmol: nicove * r9452 /trunk/Jmol-FAH/projects/p2171.xyz.gz: Folding@Home
18:11 egonw because kde 4.0.x didn't have a suspend button
18:11 carsten which isn't working here anyway
18:11 carsten I hope with the 2.4.25 kernel it works
18:11 carsten with .24 my keyboard is finally supported
18:21 * egonw runs 2.6 and suspend works quite well
18:27 carsten yes, it works here as well but it takes to long to "restart"
18:27 carsten resume is the correct term I guess
18:28 CIA-31 jmol: hansonr * r9453 /trunk/Jmol/src/org/ (9 files in 5 dirs): (log message trimmed)
18:28 CIA-31 jmol: version=11.5.39 VERSION
18:28 CIA-31 jmol: # new feature: --threaded option for command processor uses
18:28 CIA-31 jmol: # a watcher thread to monitor a Vector, allowing the signed applet to open any file
18:28 CIA-31 jmol: # the signed applet uses this automatically unless there is a
18:28 CIA-31 jmol: # jmolSetCallback("useCommandThread", "false")
18:28 CIA-31 jmol: # which overrides the default behavior and disallows reading of files from
18:35 egonw ah, ic
19:19 CIA-31 cdk: egonw * r11273 /cdk/trunk/src/META-INF/te​st-qsaratomic.cdkdepends: Added missing dep
19:44 CIA-31 jmol: nicove * r9454 /trunk/Jmol/src/org/jmol/viewer/Jmol.properties: Version
19:45 CIA-31 jmol: nicove * r9455 /trunk/Jmol/src/org/jmol/translation/Jmol/ (16 files): Update of .po files
20:16 jbrefort joined #cdk

| Channels | #cdk index | Today | | Search | Google Search | Plain-Text | summary