Camelia, the Perl 6 bug

IRC log for #cdk, 2008-06-17

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All times shown according to UTC.

Time Nick Message
05:58 jbrefort joined #cdk
07:05 thomas_ku joined #cdk
07:05 thomas_ku moin
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08:06 jpansanel moin
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09:18 CIA-23 cdk: shk3 * r11371 /cdk/branches/cdk-1.0.x/src/org/openscience/​cdk/modeling/builder3d/ModelBuilder3D.java: fixes bug #1610997
09:20 steinbeck joined #cdk
09:21 egonw hi steinbeck
09:22 steinbeck Hi Egon
09:27 olas hi steinbeck, hi egonw
09:27 steinbeck Hi olas
09:27 thomas_ku hi everybody
09:27 steinbeck moin thomas_ku
09:27 olas steinbeck: got your msg
09:27 steinbeck ack
09:27 olas too bad you are busy
09:28 steinbeck yes indeed!
09:28 olas would have been nice otherwise :-)
09:28 egonw same here
09:28 olas some other time
09:28 egonw olas: might you send me the embrace meeting topics?
09:28 olas got none
09:28 olas just a note in my calender
09:29 olas will look it up
09:30 olas hmm, could not find any info
09:33 jpansanel hi
09:34 jpansanel egonw : the dutch football team is impressiv !
09:35 jpansanel and the french team is depressive ;)
09:35 * egonw hopes they can keep up this level
09:36 jpansanel thanks :)
09:36 egonw french will have to win tonite
09:36 egonw against italy
09:36 egonw they did not play bad at all against NL
09:36 egonw was really nice game to watch
09:37 egonw both high level
09:37 egonw shame that robben scored to fast after Henry's goal...
09:41 jpansanel french will not get in the next round if NL does not win tonight
09:41 egonw correct, and we did not win from Romania in the last two games...
09:42 egonw but then again, they are playing so much better now than in the past few years...
09:42 egonw what a difference the positioning of team players can make
09:42 jpansanel yes
09:43 * egonw expects little OS development tonite :)
09:48 * olas thinks the Dutch would prefer to bring Romania to Q-finals instead of Italy or France
09:48 olas hence thei'll loose
09:58 malick :) hup holland olee olee olee
10:04 jpansanel :)
10:04 egonw olas: then again...
10:04 egonw that means that our finals opponent will have an easier route to the finals
10:04 egonw so, less exhausted
10:05 egonw I'd rather play an exhausted italy, then a rested germany
10:28 egonw lunch time
11:20 olas egonw: since you'll most likely play Sweden in the Q-finals, that means you will not even reach the semi-finals
11:21 olas soory about that
11:21 olas soory=sorry
11:21 olas someone has to loose you knonw
11:29 steinbeck shk3: lunch?
11:29 steinbeck I'll get the rest of the team
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12:16 CIA-23 cdk: thomaskuhn * r11372 /cdk-taverna/trunk/src/main/java/org/​openscience/cdk/applications/art2aCla​ssification/Art2aClassificator.java: Some changes on the serialization due to memory problems and removing a bug which leads to an never ending loop.
12:18 CIA-23 cdk: thomaskuhn * r11373 /cdk-taverna/trunk/src/main/java/org​/openscience/cdk/applications/art2aC​lassification/Art2aCollection.java: Change the storing of the clustering results due to memory problems.
12:24 CIA-23 cdk: thomaskuhn * r11374 /cdk-taverna/trunk/src/main/java/org/op​enscience/cdk/applications/taverna/io/ (3 files): Add worker to convert xml files to gz compressed files to reduce the memory. And a worker to convert the gz files back to xml files.
12:24 CIA-23 cdk: thomaskuhn * r11375 /cdk-taverna/trunk/src/main/java/org/opens​cience/cdk/applications/taverna/io/action/ (2 files): Add file chooser actions for the two new worker
12:25 CIA-23 cdk: thomaskuhn * r11376 /cdk-taverna/trunk/src/main/java/or​g/openscience/cdk/applications/tave​rna/qsar/model/ART2AClassificator/ (ART2AClassificator.java ART2AClassificatorWorker.java):
12:25 CIA-23 cdk: Rename to ART2AClassificationWorker. And add more options to configurate the classification.
12:25 CIA-23 cdk: Switch the storing of the classification results to use the .gz compressed files to reduce the memory.
12:36 CIA-23 cdk: thomaskuhn * r11377 /cdk-taverna/trunk/src/main/java/org/openscience​/cdk/applications/taverna/qsar/model/ART2AClassi​ficator/GetART2AClassificationResultAsCSV.java: Add a worker which extracts some of the results of an ART2A classification and stores the comparable in an cvs file.
12:37 CIA-23 cdk: thomaskuhn * r11378 /cdk-taverna/trunk/src/main/​resources/META-INF/services/ (2 files): Add the new worker to the configuration file
12:38 CIA-23 cdk: thomaskuhn * r11379 /cdk-taverna/trunk/src/main/java/org/​openscience/cdk/applications/taverna/​qsar/model/ART2AClassificator/action/ (. GetART2AClassificationResultAsCSVAction.java): Add an action for the new worker
12:38 CIA-23 cdk: thomaskuhn * r11380 /cdk-taverna/trunk/src/test/java/org/​openscience/cdk/applications/taverna/​io/ConvertXMLFilesToGZFilesTest.java: Add a test for the convert xml files to gz files worker
12:39 CIA-23 cdk: thomaskuhn * r11381 /cdk-taverna/trunk/src/main​/resources/cdk.properties: Add the new worker to the configuration file
12:39 CIA-23 cdk: thomaskuhn * r11382 /cdk-taverna/trunk/src/test/java/org/​openscience/cdk/applications/taverna/​io/ConvertGZFilesToXMLFilesTest.java: Add a test for the convert gz files to xml files worker
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12:43 CIA-23 cdk: thomaskuhn * r11383 /cdk-taverna/trunk/src/test/java/org/openscience​/cdk/applications/taverna/io/XMLFileIOTest.java: Add a test for the xml file handling
12:44 CIA-23 cdk: thomaskuhn * r11384 /cdk-taverna/trunk/src/test/java/org/opensci​ence/cdk/applications/taverna/qsar/model/ART​2AClassificator/ART2AClassificatorTest.java: Adapted the test to the new usage of the classification
12:45 CIA-23 cdk: thomaskuhn * r11385 /cdk-taverna/trunk/src/test/java/org/openscience/​cdk/applications/taverna/qsar/model/ART2AClassifi​cator/GetART2AClassificationResultAsCSVTest.java: Add a test for the ART"AClussificationResultAsCSV Worker
12:45 CIA-23 cdk: thomaskuhn * r11386 /cdk-taverna/trunk/src/test/resources/data/ (5 files in 2 dirs): Add three new test files for the unit testing
12:56 egonw thomas_ku: making a new release?
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13:16 thomas_ku egonw: not now but in 2- 4 weeks
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15:10 CIA-23 cdk: rajarshi * r11387 /cdk/trunk/src/main/org/ope​nscience/cdk/pharmacophore/ (PharmacophoreQueryAngleBond.java PharmacophoreUtils.java): Added support in the pcore XML reader and writer for the name attribute of pharmacophore elements. Also fixed a coercision type
15:19 CIA-23 cdk: rajarshi * r11388 /cdk/trunk/src/data/pcore/pcore.xml: Added a name attribute to the pcore def
15:29 CIA-23 cdk: rajarshi * r11389 /cdk/trunk/src/test/org/openscience/cdk/ph​armacophore/PharmacophoreUtilityTest.java: Updated test to check for the name attr in pharmacophore elements
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16:43 shk3 any debian expert?
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17:25 CIA-23 cdk: rajarshi * r11390 /cdk/trunk/src/main/org/openscience/cdk​/pharmacophore/PharmacophoreUtils.java: Fixed a small bug that was causing expcetions when writing out a query with no name specified
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