Camelia, the Perl 6 bug

IRC log for #cdk, 2008-07-10

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All times shown according to UTC.

Time Nick Message
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07:06 thomas_ku moin
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09:39 CIA-33 cdk: shk3 * r11529 /cdk/branches/cdk-1.0.x/src/org/openscience/cdk/​geometry/GeometryToolsInternalCoordinates.java: improved commentary
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11:31 jpansanel moin
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15:14 CIA-33 cdk: miguelrojasch * r11530 /cdk/branches/miguelrojasch-Reactio​nOntology/src/main/org/openscience/​cdk/formula/MolecularFormula.java: removed some strange characters
15:14 CIA-33 cdk: miguelrojasch * r11531 /cdk/branches/miguelrojasch-ReactionO​ntology/src/main/org/openscience/cdk/​tools/IonizationPotentialTool.java: change the model for getDTBondF
15:29 egonw joined #cdk
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15:51 CIA-33 cdk: egonw * r11532 /cdk/branches/drzz-jumbo5.4.1/: Removed outdated branch; to be replaced with a fresh copy of trunk/
15:51 egonw ha, CIA is working agian :)
15:54 CIA-33 cdk: egonw * r11533 /cdk/branches/drzz-jumbo5.4/: Fresh copy of trunk for Dan.
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18:17 CIA-33 jmol: hansonr * r9580 /trunk/Jmol/src/org/jmol/ (13 files in 3 dirs):
18:17 CIA-33 jmol: version=11.5.46_dev quaternion({atom expression}); drawhover in state
18:17 CIA-33 jmol: # new feature: quaternion({atom expression}) -- returns calculated
18:17 CIA-33 jmol: # frame based on quaternionFrame setting.
18:17 CIA-33 jmol: # bug fix: drawhover not in state
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18:58 egonw moin
19:01 CIA-33 cdk: egonw * r11534 /cdk/branches/egonw-atowl/src/test/org/opens​cience/cdk/config/AtomTypeFactoryTest.java: Added test for reading atom types from OWL files
19:04 jpansanel moin
19:05 egonw hi jpansanel
19:05 egonw logo looks OK
19:05 egonw not shocking, but clear
19:06 egonw but I'm not a graphics guy
19:06 egonw so, don't take these comments too serisouly :)
19:07 CIA-33 jmol: hansonr * r9581 /trunk/Jmol/src/org/jmol/viewer/ (Eval.java Jmol.properties): version=11.5.46_dev # bug fix: array size limited
19:20 jpansanel egonw : the logo is a simple idea
19:20 jpansanel I hope that it will be enhanced in a near futur
19:21 jpansanel I'm going to a workshop on Molecular Screening in September
19:21 CIA-33 cdk: egonw * r11535 /cdk/branches/egonw-atowl/src/m​ain/org/openscience/cdk/config/ (2 files in 2 dirs): Copied classes as template for OWL-based reading
19:21 jpansanel I would like to have some paper to present FLOSS software for chemoinformatics
19:22 egonw ok, anything I can do?
19:28 CIA-33 jmol: nicove * r9582 /trunk/Jmol/src/org/jmol/translation/JmolApplet/ (14 files): Update of .po files
19:28 CIA-33 cdk: egonw * r11536 /cdk/branches/egonw-atowl/src/main/org/openscien​ce/cdk/config/atomtypes/OWLAtomTypeHandler.java: And a template SAX handler
19:32 jpansanel egonw : I you know a good painter
19:32 egonw que?
19:32 jpansanel or with good marketing skill
19:33 jpansanel I'll wait for the exact program
19:33 jpansanel and submit a list of software
19:33 jpansanel It would be fine to tell how FLOSS software can answer to many question
19:33 jpansanel s
19:34 egonw yes, indeed
19:34 egonw but, no, I don't know such people (unfortunately)
19:52 CIA-33 cdk: egonw * r11537 /cdk/branches/egonw-atowl/src/m​ain/org/openscience/cdk/config/ (4 files in 2 dirs): Worked out template OWL reading
19:57 CIA-33 cdk: rajarshi * r11538 /cdk/branches/egonw-diff/src/test/org/openscie​nce/cdk/tools/diff/AtomContainerDiffTest.java:
19:57 CIA-33 cdk: Added a test case to check that there is a differece between atomcontainers
19:57 CIA-33 cdk: derived from two forms of benzene SMILES (aromatic and kekule). The difference
19:57 CIA-33 cdk: should arise since the maximum bond order for the atoms in the aromatic form is
19:57 CIA-33 cdk: 1 and in the kekule form is 2.
19:57 jpansanel Yeasterday, I've submitted a job application  to the CNRS
19:58 egonw CNRS?
20:09 CIA-33 cdk: egonw * r11539 /cdk/branches/egonw-atowl/src/t​est/org/openscience/cdk/config/ (3 files in 2 dirs): Add copied templates for the three missing test classes for OWL reading
20:12 CIA-33 jmol: nicove * r9583 /trunk/Jmol/src/org/jmol/i18n/GT.java: Update of .po files
20:20 CIA-33 cdk: egonw * r11540 /cdk/branches/egonw-atowl/sr​c/test/org/openscience/cdk/ (4 files in 3 dirs): Set up the unit tests for reading atom types from OWL
20:24 jpansanel egonw : Centre National pour la Recherche Scientifique (National Center for Scientific Research)
20:26 egonw ah, ic
20:43 CIA-33 cdk: egonw * r11541 /cdk/trunk/ (50 files in 7 dirs): Merged in egonw-diff
20:51 CIA-33 cdk: egonw * r11542 /cdk/branches/egonw-diff/: Merged with trunk, so removing the branch

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