Camelia, the Perl 6 bug

IRC log for #cdk, 2008-07-12

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All times shown according to UTC.

Time Nick Message
05:38 jbrefort joined #cdk
07:36 bag joined #cdk
07:37 CIA-33 jmol: nicove * r9585 /trunk/Jmol-FAH/projects/ (p1736.xyz.gz p4596.xyz.gz): Folding@Home
09:55 carsten joined #cdk
10:05 CIA-33 jmol: nicove * r9586 /trunk/Jmol-FAH/projects/ (p4594.xyz.gz p4595.xyz.gz): Folding@Home
10:39 CIA-33 jmol: nicove * r9587 /trunk/Jmol/src/org/jmol/ (16 files in 3 dirs): Managing languages partially translated
13:08 CIA-33 jmol: nicove * r9588 /trunk/Jmol-FAH/projects/p1739.xyz.gz: Folding@Home
13:44 carsten joined #cdk
14:28 egonw joined #cdk
14:53 CIA-33 cdk: egonw * r11549 /cdk/branches/egonw-atowl/src/test/org/openscience​/cdk/config/atomtypes/OWLAtomTypeReaderTest.java: Now testing the OWL format
14:54 CIA-33 cdk: egonw * r11550 /cdk/branches/egonw-atowl/src/m​ain/org/openscience/cdk/config/ (3 files in 2 dirs): Implemented atom type reading from OWL
17:04 CIA-33 jmol: aherraez * r9589 /trunk/Jmol/src/org/jmol/translat​ion/JmolApplet/JmolApplet-es.po: Spanish
17:32 egonw joined #cdk
17:32 egonw moin
17:59 CIA-33 cdk: egonw * r11551 /cdk/branches/egonw-atowl/src/main/org/o​penscience/cdk/dict/data/atom-types.owl: Added 'geometries' used by CDK atom types
17:59 CIA-33 cdk: egonw * r11552 /cdk/branches/egonw-atowl/src/main/org/ope​nscience/cdk/dict/data/cdk-atom-types.owl: Added all other CDK atom types
18:02 CIA-33 cdk: egonw * r11553 /cdk/branches/egonw-atowl/src/main/org/ope​nscience/cdk/dict/data/cdk-atom-types.owl: Restored CDK atom type ID of the CDK atom type C.sp3, and named the category differently
18:31 CIA-33 cdk: egonw * r11554 /cdk/branches/egonw-atowl/src/main/org/ope​nscience/cdk/dict/data/cdk-atom-types.owl: Added dummy atom type
18:31 CIA-33 cdk: egonw * r11555 /cdk/branches/egonw-atowl/src/main/org/opens​cience/cdk/atomtype/CDKAtomTypeMatcher.java: Now makes use of the new OWL-based atom type definitions
19:39 CIA-33 cdk: egonw * r11556 /cdk/branches/egonw-atowl/src/main/org/o​penscience/cdk/dict/data/atom-types.owl: Arguable 'sp3' == 'tetrahedral', but added for simplicity as it is being used in the Sybyl atom type list
19:39 CIA-33 cdk: egonw * r11557 /cdk/branches/egonw-atowl/src/main/org/open​science/cdk/dict/data/sybyl-atom-types.owl: Added an OWL version of the Sybyl atom type list
20:02 CIA-33 cdk: egonw * r11558 /cdk/branches/egonw-atowl/src/mai​n/org/openscience/cdk/dict/data/ (cdk-atom-types.owl sybyl-atom-types.owl): Changed URL to fix a file system path conflict over at http://cdk.sf.net/ontologies :(
20:16 shk3 joined #cdk
20:38 egonw joined #cdk
20:39 egonw hi shk3
20:39 egonw did not notice my IRC client had died
20:50 shk3 hi egonw
20:50 shk3 the failure in nightly in cdk 1.0 is indeed occuring only in ant
20:51 shk3 looks like the file is not found
20:52 shk3 but no idea why
20:52 shk3 anything special needed for including a mol file in the build?
21:08 egonw shk3: file a bug report
21:08 egonw I'll fix it tomorrow then
21:09 egonw you may try yourself of course...
21:09 egonw the file should be mentioned in src/META-INF/something.bla
21:10 egonw test-builder3d.extrafiles
21:10 egonw to be precise
21:10 egonw ok, got to get some sleep now
21:11 shk3 ah, thanks
21:11 shk3 didn't know that
21:11 shk3 sleep
21:11 shk3 well
22:09 CIA-33 cdk: shk3 * r11559 /cdk/branches/cdk-1.0.x/src/META​-INF/test-builder3d.extrafiles: mol file needed in test
22:23 CIA-33 cdk: shk3 * r11560 /cdk/branches/cdk-1.0.x/src/org/openscience/cdk/​test/modeling/builder3d/ModelBuilder3dTest.java: code cleanups
22:30 CIA-33 cdk: shk3 * r11561 /cdk/trunk/src/META-INF/test-builder3d.extrafiles: mol file needed in test
22:31 CIA-33 cdk: shk3 * r11562 /cdk/trunk/src/test/org/openscience/cdk/mo​deling/builder3d/ModelBuilder3dTest.java: updated the modelbuilder3d tests in trunk to all of those in cdk1.0.x
22:31 CIA-33 cdk: shk3 * r11563 /cdk/trunk/src/data/mdl/bug1241421.mol: mol file needed in test

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