Camelia, the Perl 6 bug

IRC log for #cdk, 2008-07-15

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All times shown according to UTC.

Time Nick Message
01:16 Conrad joined #cdk
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08:45 egonw hi all
08:45 zarah hi egonw
08:54 CIA-33 cdk: egonw * r11578 /cdk/trunk/src/main/org/openscience/cdk/ (14 files in 3 dirs): Use interfaces as types, instead of implementations
08:55 CIA-33 cdk: egonw * r11579 /cdk/trunk/src/test/org/openscience/cdk/m​odeling/forcefield/ForceFieldTests.java: Compile fix: Hashtable -> Map
08:55 CIA-33 cdk: egonw * r11580 /cdk/trunk/src/main/org/openscience/cdk/modeling/ (3 files in 2 dirs): Vector -> List
09:07 CIA-33 cdk: egonw * r11581 /cdk/trunk/src/main/org/openscience​/cdk/formula/MolecularFormula.java: Beefed up JavaDoc: use <sub>; @link{}
09:12 CIA-33 cdk: egonw * r11582 /cdk/trunk/src/main/org/openscience/c​dk/debug/DebugMolecularFormula.java: Hashtable -> Map
09:12 CIA-33 cdk: egonw * r11583 /cdk/trunk/src/main/org/openscience/c​dk/debug/DebugMolecularFormula.java: Implemented stubs... I wonder why the unit tests did not pick this up ... :(
09:19 zarah joined #cdk
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12:14 CIA-33 cdk: egonw * r11584 /cdk/trunk/src/main/org/openscience​/cdk/protein/data/PDBPolymer.java: Added typing of the generics (closes #2017925)
13:33 CIA-33 jmol: hansonr * r9593 /trunk/Jmol/src/org/ (8 files in 4 dirs): (log message trimmed)
13:34 CIA-33 jmol: version=11.5.47_dev draw ARC; draw RAMACHANDRAN; write RAMACHANDRAN DRAW
13:34 CIA-33 jmol: # new feature: draw ARC {pt1} {pt2} {ptref} {theta0, nDegrees, fractionalOffset}
13:34 CIA-33 jmol: # new feature: draw ARROW ARC {pt1} {pt2} {ptref} {theta0, nDegrees, fractionalOffset}
13:34 CIA-33 jmol: #
13:34 CIA-33 jmol: # draws a circular arc or arrow around an axis defined by {pt1} and {pt2}
13:34 CIA-33 jmol: # using {ptref} as a starting point (looking down the axis, angles
14:06 CIA-33 jmol: hansonr * r9594 /trunk/Jmol/src/org/jmol/viewer/ (Eval.java Jmol.properties): (log message trimmed)
14:06 CIA-33 jmol: 11.5.47 VERSION
14:06 CIA-33 jmol: # bug fix: 11.5.46 broke standard "spin x 30"
14:06 CIA-33 jmol: # new feature: draw ARC {pt1} {pt2} {ptref} {theta0, nDegrees, fractionalOffset}
14:06 CIA-33 jmol: # new feature: draw ARROW ARC {pt1} {pt2} {ptref} {theta0, nDegrees, fractionalOffset}
14:06 CIA-33 jmol: #
14:06 CIA-33 jmol: # draws a circular arc or arrow around an axis defined by {pt1} and {pt2}
14:34 CIA-33 cdk: egonw * r11585 /cdk/trunk/src/main/org/ope​nscience/cdk/Reaction.java: Make the change before the notification is send around (closes #1961786)
14:54 CIA-33 cdk: egonw * r11586 /cdk/trunk/src/data/mdl/zinctest.mol: Removed compound with unreasonable charge (closes #1790719)
14:56 rojasm joined #cdk
15:12 CIA-33 cdk: rajarshi * r11587 /cdk/trunk/src/main/org/openscience/cdk/qsar/descr​iptors/molecular/LengthOverBreadthDescriptor.java: Added copyright notice
15:20 CIA-33 cdk: shk3 * r11588 /cdk/trunk/src/test/org/openscience/cdk/fi​ngerprint/ExtendedFingerprinterTest.java: added a test case
15:31 tashiro joined #cdk
15:54 CIA-33 jmol: gutow * r9595 /trunk/Jmol/src/org/ (3 files in 2 dirs): # bug fix: Removed stray semicolons from header script comments in webexport templates. They were causing WYSIWG web editors to corrupt the scripts.
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16:27 egonw moin
16:35 CIA-33 cdk: egonw * r11589 /cdk/trunk/src/main/org/openscience/cdk/io/ (MDLV2000Reader.java PMPReader.java): Some generics cleanup + new Integer -> Integer.valueOf
16:36 CIA-33 cdk: egonw * r11590 /cdk/trunk/src/test/org/opensci​ence/cdk/io/PMPReaderTest.java: Use of <sup> + typo fix in @see
16:37 CIA-33 cdk: egonw * r11591 /cdk/trunk/src/main/org/openscie​nce/cdk/qsar/descriptors/atomic/ (5 files): new Integer -> Integer.valueOf
16:48 CIA-33 cdk: egonw * r11592 /cdk/trunk/src/main/org/openscienc​e/cdk/smiles/SmilesGenerator.java: Vector -> (Array)List
16:51 CIA-33 cdk: egonw * r11593 /cdk/trunk/src/main/org/openscienc​e/cdk/smiles/SmilesGenerator.java: Mmm... reverted bits of the previous patch after noticing lots of synchronized methods, just to be on the safe side: all objects are now Vector again, but passes around interfaces, as it should
17:01 CIA-33 cdk: egonw * r11594 /cdk/trunk/src/main/org/openscience/c​dk/renderer/color/CPKAtomColors.java: Typed Maps
17:15 CIA-33 cdk: egonw * r11595 /cdk/trunk/src/test/org/openscience/cdk/ (4 files in 3 dirs): Added unit testing for the render module
17:48 CIA-33 jmol: hansonr * r9596 /trunk/Jmol/src/org/jmol/viewer/ (Eval.java Jmol.properties):
17:48 CIA-33 jmol: 11.5.47 VERSION (b)
17:48 CIA-33 jmol: # bug fix: 11.5.46 broke standard "spin x 30" (b)
17:50 CIA-33 jmol: hansonr * r9597 /trunk/Jmol/src/org/jmol/viewer/Eval.java:
17:51 CIA-33 jmol: hansonr * r9598 /trunk/Jmol/src/org/jmol/viewer/Eval.java:
18:57 bag joined #cdk
19:05 egonw bye all
19:06 CIA-33 cdk: egonw * r11596 /cdk/trunk/ (4 files in 2 dirs): Set up testing for the render module
19:13 CIA-33 jmol: nicove * r9599 /trunk/Jmol-FAH/projects/ (p2174.xyz.gz p2176.xyz.gz): Folding@Home
19:22 CIA-33 jmol: nicove * r9600 /trunk/Jmol/src/org/jmol/translation/ (Jmol/Jmol-pt_BR.po JmolApplet/JmolApplet-pt_BR.po): Translation: Brazilian Portuguese (pt_BR)
19:29 CIA-33 jmol: nicove * r9601 /trunk/Jmol/src/org/jmol/viewer/Jmol.properties: Version
19:29 CIA-33 jmol: nicove * r9602 /trunk/Jmol-web/ (cache.properties source/doc/fah/fah-projects.xml): Folding@Home
21:20 tashiro left #cdk

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