Camelia, the Perl 6 bug

IRC log for #cdk, 2008-07-18

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All times shown according to UTC.

Time Nick Message
00:39 CIA-33 cdk: mesprague * r11639 /cdk/branches/mesprague-symmetry/src​/main/org/openscience/cdk/symmetry/ (6 files): Added the first draft of the symmetry perception classes.
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05:45 CIA-33 cdk: egonw * r11640 /cdk/branches/egonw-atowl/src/main/o​rg/openscience/cdk/config/atomtypes/ (OWLAtomTypeMappingHandler.java OWLAtomTypeMappingReader.java): Templates for reading OWL-based atom type mapping files
06:02 thomas_ku moin
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12:41 CIA-33 jmol: hansonr * r9612 /branches/v11_4/Jmol/src/org/jmol/ (4 files in 2 dirs): version=11.4.6_dev # bug fix: DEFINE can cause compiling error, e.g. "[2MO]" in 1tmo
12:43 CIA-33 jmol: hansonr * r9613 /branches/v11_4/Jmol/src/org/jmol/ (2 files in 2 dirs): version=11.4.6_dev # bug fix: PDB site definition does not ignore empty site definitions
12:45 CIA-33 jmol: hansonr * r9614 /trunk/Jmol/src/org/jmol/ (4 files in 3 dirs):
12:45 CIA-33 jmol: version=11.5.48_dev PDB site definition / DEFINE compilation
12:45 CIA-33 jmol: # code: compiler error reporting improved
12:45 CIA-33 jmol: # bug fix: PDB site definition does not ignore empty site definitions
12:45 CIA-33 jmol: # bug fix: DEFINE can cause compiling error, e.g. "[2MO]" in 1tmo
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16:51 CIA-33 cdk: rajarshi * r11641 /cdk/branches/rajarshi-descnames/src/t​est/org/openscience/cdk/qsar/descripto​rs/atomic/AtomicDescriptorTest.java: Fixed error message wording
16:55 CIA-33 cdk: rajarshi * r11642 /cdk/branches/rajarshi-descnames/src/main/o​rg/openscience/cdk/qsar/descriptors/atomic/ (30 files): Added test method annotation for getDescriptorNames()
16:57 CIA-33 cdk: rajarshi * r11643 /cdk/branches/rajarshi-descnames/src/mai​n/org/openscience/cdk/qsar/descriptors/ (2 files in 2 dirs): Added test method annotation for getDescriptorNames()
16:58 CIA-33 cdk: rajarshi * r11644 /cdk/branches/rajarshi-descnames/src/main/​org/openscience/cdk/qsar/descriptors/bond/ (6 files): Added test method annotation for getDescriptorNames()
17:16 CIA-33 cdk: rajarshi * r11645 /cdk/branches/rajarshi-descnames/src/main/org​/openscience/cdk/qsar/descriptors/molecular/ (43 files): Added test method annotation for getDescriptorNames()
17:23 CIA-33 cdk: rajarshi * r11646 /cdk/branches/rajarshi-descnames/src/main/org​/openscience/cdk/qsar/DescriptorEngine.java: Added test method annotations
17:31 CIA-33 cdk: rajarshi * r11647 /cdk/branches/rajarshi-descnames/src/main​/org/openscience/cdk/qsar/descriptors/mol​ecular/LengthOverBreadthDescriptor.java: Corrected to avoid throwing an exception
17:34 CIA-33 cdk: rajarshi * r11648 /cdk/branches/rajarshi-descnames/src/main​/org/openscience/cdk/qsar/descriptors/mol​ecular/LengthOverBreadthDescriptor.java: Fixed the proper type of result to be returned
17:37 CIA-33 cdk: rajarshi * r11649 /cdk/branches/rajarshi-descnames/src/test/org/o​penscience/cdk/qsar/DescriptorEngineTest.java: A minor change to a test
18:03 CIA-33 cdk: rajarshi * r11650 /cdk/branches/rajarshi-descnames/src/main/org​/openscience/cdk/qsar/DescriptorEngine.java: Updated code so that it does not include test classes when loading decsriptor instances
18:23 CIA-33 cdk: rajarshi * r11651 /cdk/branches/rajarshi-descnames/src/ma​in/org/openscience/cdk/qsar/descriptors​/atomic/RDFProtonDescriptor_GHR.java: Fixed a bug which caused wrong descriptor names to be returned
18:51 CIA-33 cdk: rajarshi * r11652 /cdk/branches/rajarshi-descnames/src/main/o​rg/openscience/cdk/qsar/descriptors/atomic/ (2 files): Fixed so that the descriptor does not modify theinput molecule or atom
19:01 CIA-33 cdk: rajarshi * r11653 /cdk/branches/rajarshi-descnames/src/main/o​rg/openscience/cdk/qsar/descriptors/atomic/ (2 files): Fixed so that the descriptor does not modify theinput molecule or atom
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20:08 CIA-33 cdk: rajarshi * r11654 /cdk/branches/rajarshi-descnames/src/mai​n/org/openscience/cdk/qsar/descriptors/m​olecular/MomentOfInertiaDescriptor.java: Updated a dependency tag
21:18 CIA-33 cdk: rajarshi * r11655 /cdk/branches/rajarshi-descnames/src/ (6 files in 5 dirs): Added the Kier & Hall SMARTS descriptor, which is frequency of the E-state indices. Updated the desc ontology and add a unit test. Also updated the dependency files so things compile OK
21:19 CIA-33 cdk: rajarshi * r11656 /cdk/branches/rajarshi-descnames/src/mai​n/org/openscience/cdk/qsar/descriptors/m​olecular/KierHallSmartsDescriptor.java: fixed a typo in the Javadoc

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