Camelia, the Perl 6 bug

IRC log for #cdk, 2008-07-22

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All times shown according to UTC.

Time Nick Message
04:56 egonw joined #cdk
04:56 egonw @msg
04:56 zarah egonw: You have no new messages.
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08:17 CIA-33 cdk: egonw * r11687 /cdk/branches/rajarshi-descnames/src/test/org/open​science/cdk/qsar/descriptors/DescriptorTest.java: Added Class typing; simplifies the code.
08:52 CIA-33 cdk: egonw * r11688 /cdk/branches/rajarshi-descnames/src/ (9 files in 8 dirs): First batch of review comments: Rajarshi, check for FIXME: RGDN (though there might be an occasional RDGN misspelling)
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11:36 CIA-33 cdk: egonw * r11689 /cdk/branches/rajarshi-descnames/src/main/org​/openscience/cdk/qsar/descriptors/molecular/ (4 files): Second (final) batch of reviewer comments
13:15 malick left #cdk
15:14 CIA-33 cdk: rajarshi * r11690 /cdk/branches/rajarshi-descnames/src/ (2 files in 2 dirs): Converted var def to use interfaces and cleaned up Javadocs
15:17 CIA-33 cdk: rajarshi * r11691 /cdk/branches/rajarshi-descnames/src/test/org/open​science/cdk/qsar/descriptors/DescriptorTest.java: Added a test to make sure that descriptor names are not empty strings
15:19 CIA-33 cdk: rajarshi * r11692 /cdk/branches/rajarshi-descnames/src/main/​org/openscience/cdk/qsar/descriptors/molec​ular/RotatableBondsCountDescriptor.java: Simplified code
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15:23 CIA-33 cdk: rajarshi * r11693 /cdk/branches/rajarshi-descnames/src/tes​t/org/openscience/cdk/qsar/descriptors/m​olecular/MolecularDescriptorTest.java:
15:23 CIA-33 cdk: Updated code to fail if the test molecule could not be constrcted properly -
15:23 CIA-33 cdk: this is will probably never happen, but it's good to check. We till wrap the
15:23 CIA-33 cdk: desc calculation in try/catch, to ensure tht if it does happen the test fails
15:29 CIA-33 cdk: rajarshi * r11694 /cdk/branches/rajarshi-descnames/src/main/​org/openscience/cdk/qsar/descriptors/molec​ular/LongestAliphaticChainDescriptor.java: Converted usage of Vector to List
15:31 CIA-33 cdk: rajarshi * r11695 /cdk/branches/rajarshi-descnames/src/mai​n/org/openscience/cdk/qsar/descriptors/m​olecular/LargestPiSystemDescriptor.java: Converted usage of Vector to List
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16:21 CIA-33 cdk: rajarshi * r11696 /cdk/branches/rajarshi-descn​ames/doc/refs/cheminf.bibx: Updated refs
16:44 CIA-33 cdk: rajarshi * r11697 /cdk/branches/rajarshi-descnames/src/mai​n/org/openscience/cdk/config/fragments/ (. ESTateFragments.java): Moved the EState SMARTS patterns (taken from the RDKit project) into its own file,so it canbe clearly marked as BSD license
16:45 CIA-33 cdk: rajarshi * r11698 /cdk/branches/rajarshi-descnames/src/main/org/open​science/cdk/config/fragments/EStateFragments.java: fixed a stupid typo in the name of the class
16:50 CIA-33 cdk: rajarshi * r11699 /cdk/branches/rajarshi-descnames/src/mai​n/org/openscience/cdk/qsar/descriptors/m​olecular/KierHallSmartsDescriptor.java:
16:50 CIA-33 cdk: Updated code to use the EStateFragment class. Fixed Javadocs. Currently, errors
16:50 CIA-33 cdk: in the decriptor calculation will stilll set the decriptor values to (int)
16:50 CIA-33 cdk: Double.NaN. This will in fact be converted to 0 - Integer does not have the
16:50 CIA-33 cdk: concept of NaN
16:54 CIA-33 cdk: rajarshi * r11700 /cdk/branches/rajarshi-descnames/src/mai​n/org/openscience/cdk/qsar/descriptors/m​olecular/KierHallSmartsDescriptor.java: Cleaned up Javadocs
16:56 CIA-33 cdk: rajarshi * r11701 /cdk/branches/rajarshi-descnames/src/test​/org/openscience/cdk/qsar/descriptors/mol​ecular/KierHallSmartsDescriptorTest.java: Updated copyright
17:03 CIA-33 cdk: rajarshi * r11702 /cdk/branches/rajarshi-descnames/src/main/or​g/openscience/cdk/qsar/DescriptorValue.java: Added a simplified constrctor
17:04 CIA-33 cdk: rajarshi * r11703 /cdk/branches/rajarshi-descnames/src/main/org/open​science/cdk/config/fragments/ESTateFragments.java: Got rid of the wrongly named class
17:15 CIA-33 cdk: rajarshi * r11704 /cdk/branches/rajarshi-descnames/src/ (34 files in 5 dirs): Updatde to use the simplified constrctor for DescriptorValue when no error occurs
17:24 CIA-33 cdk: rajarshi * r11705 /cdk/branches/rajarshi-descnames/src/main/​org/openscience/cdk/qsar/descriptors/bond/ (6 files): Updatde to use the simplified constrctor for DescriptorValue when no error occurs
17:39 CIA-33 cdk: rajarshi * r11706 /cdk/branches/rajarshi-descnames/src/main/org​/openscience/cdk/qsar/descriptors/molecular/ (43 files): Updatde to use the simplified constrctor for DescriptorValue when no error occurs
17:39 CIA-33 jmol: gutow * r9625 /branches/v11_4/Jmol/src/org/ (4 files in 2 dirs):
17:39 CIA-33 jmol: # bug fix: Removed stray semicolons from header script comments in webexport templates. They
17:39 CIA-33 jmol: # were causing WYSIWYG web editors to corrupt the scripts.
17:39 CIA-33 jmol: # bug fix: Popin.png in WebExport replaced, was too large, causing dialog box to default to too big on small screens.
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19:05 CIA-33 jmol: gutow * r9626 /branches/v11_4/Jmol/src/org/openscien​ce/jmol/app/webexport/html/pop_in.png: Re-commit of pop_in.png that for some reason got lost from 11.4 src July 22, 2008
19:09 CIA-33 jmol: hansonr * r9627 /trunk/Jmol/src/org/jmol/sh​apespecial/Polyhedra.java: comment
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