Camelia, the Perl 6 bug

IRC log for #cdk, 2008-07-26

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All times shown according to UTC.

Time Nick Message
00:00 CIA-34 jmol: hansonr * r9647 /trunk/Jmol/src/org/jmol/viewer/ (Jmol.properties Token.java): (log message trimmed)
00:00 CIA-34 jmol: 11.5.51 VERSION -- critical update
00:00 CIA-34 jmol: # bug fix: 11.5.49 and 11.5.50 broken for ".max"
00:00 CIA-34 jmol: # new feature: PRELIMINARY aniso_beta for cif files -- has not been checked for correct Ortep type -- set to 0 for now
00:00 CIA-34 jmol: # new feature: application select button reinstated
00:00 CIA-34 jmol: # new feature: application pick button reinstated
00:00 CIA-34 jmol: # new feature: application measure button tied to picking style
04:42 CIA-34 jmol: hansonr * r9648 /trunk/Jmol/src/org/jmol/ (shape/AxesRenderer.java viewer/Jmol.properties): 11.5.51 (b) VERSION (fixes axes position [xx yy] bug in 11.5.51)
06:15 jbrefort joined #cdk
07:53 CIA-34 cdk: egonw * r11761 /cdk/trunk/build.xml: Removed redundant includes (fixes Nightly)
07:55 bag joined #cdk
08:02 CIA-34 jmol: nicove * r9649 /trunk/Jmol/src/org/jmol/viewer/Jmol.properties: Version
09:17 egonw joined #cdk
09:18 egonw thomas_ku: ping
09:18 egonw thomas_ku: you might want to blog about this paper: http://bioinformatics.oxfordjournal​s.org/cgi/content/abstract/24/2/287
09:18 zarah egonw's link is also http://tinyurl.com/55p9hd
09:18 egonw it mentions the CDK wrt to Taverna
09:19 * egonw will do 'CDK Literature #5' today
09:19 egonw and will mention it too, but might be a nice opportunity to do a blog
09:19 egonw and, if you blog about it before I do, I can link to your blog ;)
09:20 egonw it's good to advertise your work... to give it some impact
09:20 egonw only time will tell about the sceintific success, but no harm in plugging it a bit
09:21 egonw http://cb.openmolecules.net/​blog_search.php?blog_id=187
09:21 zarah egonw's link is also http://tinyurl.com/6phsdh
09:22 egonw hi zarah, keeping yourself busy again?
10:54 egonw thomas_ku: blogged about the paper
11:36 egonw thomas_ku: you might also find this one interesting: http://www.ncbi.nlm.nih.gov/pubmed/18428092?dop​t=AbstractPlus&holding=f1000,f1000m,isrctn
11:36 zarah egonw's link is also http://tinyurl.com/6qqse6
12:34 CIA-34 cdk: egonw * r11762 /cdk/trunk/src/ (6 files in 6 dirs): More PMD and API clean up: major API clean up in the UIT
14:16 egonw joined #cdk
14:41 jbrefort joined #cdk
14:41 CIA-34 jmol: aherraez * r9650 /trunk/Jmol/src/org/jmol/translation/ (Jmol/Jmol-es.po JmolApplet/JmolApplet-es.po): Spanish
14:53 CIA-34 cdk: egonw * r11763 /cdk/trunk/src/test/org/openscien​ce/cdk/io/ReaderFactoryTest.java: More informative error message
14:53 CIA-34 cdk: egonw * r11764 /cdk/trunk/src/main/org/openscien​ce/cdk/io/formats/MDLFormat.java: Fixed matching: return false for every line other than the 4th
15:41 CIA-34 cdk: egonw * r11765 /cdk/trunk/src/ (2 files in 2 dirs): Cleared a dependency: extra does not need to depend on nonotify
16:18 egonw joined #cdk
18:02 egonw joined #cdk
18:24 CIA-34 cdk: egonw * r11766 /cdk/trunk/src/META-INF/ (reaction.cdkdepends smiles.cdkdepends): Removed non-existing dependencies
18:25 CIA-34 cdk: egonw * r11767 /cdk/trunk/src/ (12 files in 2 dirs): Removed dependency on nonotify
19:23 CIA-34 cdk: egonw * r11768 /cdk/trunk/src/ (3 files in 2 dirs): Removed dependency of charges on nonotify
19:59 CIA-34 cdk: egonw * r11769 /cdk/trunk/src/META-INF/pcore.cdkdepends: Removed non-existend dependency
20:00 CIA-34 cdk: egonw * r11770 /cdk/trunk/src/ (2 files in 2 dirs): Remove dependency of ionpot on data, and non-existing deps on sdg and nonotify
20:28 CIA-34 cdk: egonw * r11771 /cdk/trunk/src/META-INF/ (qsar.cdkdepends structgen.cdkdepends): Removed a few non-existing deps
20:36 CIA-34 cdk: egonw * r11772 /cdk/trunk/src/ (4 files in 2 dirs): Removed dependency on nonotify
20:45 CIA-34 cdk: egonw * r11773 /cdk/trunk/src/ (3 files in 2 dirs): Removed dependency on nonotify
20:45 CIA-34 cdk: egonw * r11774 /cdk/trunk/src/META-INF/ (qsarmolecular.cdkdepends qsarprotein.cdkdepends): Removed non-existing deps
21:00 CIA-34 cdk: egonw * r11775 /cdk/trunk/src/META-INF/qsarionpot.cdkdepends: Removed non-existing dep
21:18 CIA-34 cdk: egonw * r11776 /cdk/trunk/src/META-INF/pcore.cdkdepends: Removed non-existing dep
21:27 CIA-34 cdk: rajarshi * r11777 /cdk/trunk/src/main/org/openscience/cdk/qsar​/descriptors/molecular/BCUTDescriptor.java: Updated BCUT descriptor to not use the resonance charge calculation. This means that the charge weighted BCUT's are not entirely accurate as they will not take into account pi partial charges
22:30 CIA-34 cdk: rajarshi * r11778 /cdk/trunk/ (8 files in 4 dirs): Moved EState and MACCS fp's to the extra module and updated dependencies accordingly
22:53 CIA-34 cdk: rajarshi * r11779 /cdk/trunk/src/main/org/openscience/cdk/qsar/ (10 files in 2 dirs): Fixed PMD warning for Java 1.5 idioms

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