Camelia, the Perl 6 bug

IRC log for #cdk, 2008-08-01

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All times shown according to UTC.

Time Nick Message
04:23 bag joined #cdk
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05:51 thomas_ku moin
05:51 zarah hi thomas_ku
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08:53 CIA-34 cdk: egonw * r11822 /cdk/branches/egonw-atowl/src/main/or​g/openscience/cdk/io/Mol2Reader.java: Synched accepts() with read(ICHemOBject) functionality.
10:05 carsten joined #cdk
10:35 CIA-34 cdk: egonw * r11823 /cdk/branches/egonw-atowl/src/main/org/opensc​ience/cdk/atomtype/SybylAtomTypeMatcher.java: Propagate type not found: return null of CDK atom type is null.
10:37 CIA-34 cdk: egonw * r11824 /cdk/branches/egonw-atowl/src/ (5 files in 2 dirs): Added a few Sybyl atom type perception tests
11:15 CIA-34 cdk: egonw * r11825 /cdk/branches/egonw-atowl/src/test/org​/openscience/cdk/NewCDKTestCase.java: Added missing JavaDoc on when to use this method.
12:06 CIA-34 cdk: shk3 * r11826 /cdk/branches/cdk-1.0.x/src/org/opensc​ience/cdk/applications/jchempaint/reso​urces/text/JCPGUI_stable.properties: removed preferences from jcp menu
12:07 egonw joined #cdk
12:18 CIA-34 cdk: shk3 * r11827 /cdk/branches/cdk-1.0.x/src/org/opensc​ience/cdk/applications/jchempaint/reso​urces/text/JCPGUI_stable.properties: egon said i did this wrong
12:26 CIA-34 cdk: shk3 * r11828 /cdk/branches/cdk-1.0.x/src/org/opensci​ence/cdk/applications/jchempaint/resour​ces/text/JCPGUI_bioclipse.properties: that's what it should be like
14:23 egonw joined #cdk
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19:16 egonw joined #cdk
19:17 egonw moin
19:17 zarah hi egonw
19:37 CIA-34 cdk: egonw * r11829 /cdk/trunk/src/main/org/openscien​ce/cdk/libio/cml/Convertor.java: Fixed dealing with unset fields: don't output unset fields.
20:40 rojasm joined #cdk
21:35 CIA-34 cdk: egonw * r11830 /cdk/trunk/src/main/org/openscience/cdk/arom​aticity/CDKHueckelAromaticityDetector.java: Fixed a NPE: work around a situation where the pi bond count of an atom type is not explicitly given.
21:39 CIA-34 cdk: egonw * r11831 /cdk/trunk/src/test/org/openscience/cdk/sm​iles/smarts/parser/SMARTSSearchTest.java: Fixed SMILES: W is not in the organic subset and the SMILES 'W' is therefore not valid, and should be '[W]'.
21:44 CIA-34 cdk: egonw * r11832 /cdk/trunk/src/test/org/openscience​/cdk/smiles/SmilesParserTest.java: Added a unit test for the failing parse of the (valid) SMILES '[W]'.
22:08 bag joined #cdk
22:13 CIA-34 cdk: egonw * r11833 /cdk/trunk/tools/pubchem2unittest.bsh: Download links no longer work... apparently SOAP all the way now :(
22:30 CIA-34 cdk: egonw * r11834 /cdk/trunk/src/test/org/openscience/cdk​/atomtype/CDKAtomTypeMatcherTest.java: Added test for the functional group R-Si(OC)(OC)OC.
22:40 egonw hi bag
22:40 CIA-34 cdk: egonw * r11835 /cdk/trunk/src/test/org/openscience/cd​k/atomtype/AbstractAtomTypeTest.java: Better error message.
22:41 bag hi egonw
22:43 bag have a good night, its a little bit late here in germany
22:48 CIA-34 cdk: egonw * r11836 /cdk/trunk/src/META-INF/te​st-forcefield.cdkdepends: Adding missing dependency
23:00 CIA-34 cdk: egonw * r11837 /cdk/trunk/src/ (3 files in 3 dirs): Added a N.nitro atom type for R-N(=O)=O
23:21 edrin joined #cdk

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