Camelia, the Perl 6 bug

IRC log for #cdk, 2008-08-04

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All times shown according to UTC.

Time Nick Message
00:12 CIA-34 cdk: rajarshi * r11847 /cdk/trunk/src/main/org/openscience/cdk/​pharmacophore/PharmacophoreMatcher.java: Updated Javadocs to provide info on the extensions to SMARTS that the pcore code allows for pcore group defs
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08:22 jpansanel moin
08:30 egonw hi jpansanel
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09:20 olas carsten: thanks for the feedback
09:20 olas on bioclipse
09:20 carsten no problem :-)
09:20 * carsten likes finding those stupid little details
09:20 olas we really appreciate it
09:21 carsten egonw asked me to play a bit with BC
09:21 carsten when the next alpha is out I will do it again, just ping me
09:21 olas and we're happy to get your feedback
09:21 olas sure, thanks
09:21 olas all comments are welcome
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11:22 masak @boo!
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11:27 jonalv olas: ping
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13:39 shk3 egonw: do we have something in cdk to find the size of the largest ring system,
13:39 shk3 i. e. how many rings are in it?
13:39 shk3 not how large is the largest ring?
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14:04 egonw shk3: mom
14:08 egonw not that I am aware of...
14:09 egonw the number of fused rings, you mean, right?
14:12 shk3 yes
14:14 masak sounds like an interesting weekend project
14:14 masak pair programming and extensive testing :)
14:21 shk3 hm, so this is not existing? Looks like an obvious thing
14:23 * masak wonders aloud how to search for graph-theoretical papers on that subject
14:41 CIA-34 cdk: rajarshi * r11848 /cdk/trunk/src/ (2 files in 2 dirs): Added the SMARTS defs for the functional group fingerprint. Also added the appropriate datafile for the fingerprint module so that the required data files get included in the jar
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17:48 CIA-34 cdk: egonw * r11849 /cdk/branches/egonw-atowl/src/test/org/openscie​nce/cdk/atomtype/SybylAtomTypeMatcherTest.java: Removed unused import.
18:15 CIA-34 cdk: mesprague * r11850 /cdk/branches/mesprague-iterators/:
18:19 CIA-34 cdk: egonw * r11851 /cdk/trunk/src/test/org/openscience/cdk​/coverage/CoverageAnnotationTest.java: No idea where these 'access$x00' methods comes from, but they do not need to unit tested.
18:23 CIA-34 cdk: egonw * r11852 /cdk/trunk/src/main/org/openscie​nce/cdk/qsar/descriptors/atomic/ (2 files): Renamed methods to match CamelCasing and spelling error; also made one of them private
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18:58 CIA-34 jmol: nicove * r9666 /trunk/Jmol/ (17 files in 3 dirs): Translation: Norwegian Bokmal (nb)
19:35 CIA-34 cdk: egonw * r11853 /cdk/trunk/src/main/org/openscie​nce/cdk/qsar/descriptors/atomic/ (5 files): Fixed a few NoModification fails
20:01 CIA-34 cdk: egonw * r11854 /cdk/trunk/src/main/org/opensci​ence/cdk/qsar/descriptors/bond/ (4 files): Fixed a few more NoModification fails (the last one triggers other unit test fails)
20:26 CIA-34 cdk: rajarshi * r11855 /cdk/trunk/src/main/org/openscience/cd​k/fingerprint/MACCSFingerprinter.java: removed uncommetned code
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21:16 CIA-34 cdk: rajarshi * r11856 /cdk/trunk/src/ (4 files in 2 dirs): Added substructure fingerprinter using the 307 functional group defs from InteLigand

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