Camelia, the Perl 6 bug

IRC log for #cdk, 2008-08-07

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All times shown according to UTC.

Time Nick Message
03:09 CIA-34 jmol: hansonr * r9688 /trunk/Jmol/src/org/ (11 files in 4 dirs):
03:09 CIA-34 jmol: version=11.6.RC2_dev console/menu
03:09 CIA-34 jmol: # bug fix: workaround for Java 1.6.0_10 diallowing popup menu
03:09 CIA-34 jmol: # new feature: in Java 1.6.0_10, right-click activates the console, and the
03:09 CIA-34 jmol: # console has a menubar menu item "Jmol" that is the pop-up menu.
03:09 CIA-34 jmol: # new feature: applet console has "help" menu item, which includes several hundred items.
04:35 masak joined #cdk
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05:44 thomas_ku moin
05:44 zarah hi thomas_ku
05:50 masak hi thomas_ku
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08:20 jpansanel moin
08:20 zarah hi jpansanel
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08:37 CIA-34 cdk: egonw * r11937 /cdk/trunk/src/test/org/openscien​ce/cdk/io/GamessReaderTest.java: Converted to a JUnit4 test
08:38 CIA-34 cdk: egonw * r11938 /cdk/trunk/src/ (3 files in 3 dirs): Added missing CIFReader test class template
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08:59 CIA-34 cdk: egonw * r11939 /cdk/trunk/src/main/org/openscien​ce/cdk/io/MDLRXNV3000Reader.java: Added missing unit test annotation; made a few methods private
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14:12 CIA-34 jmol: hansonr * r9689 /trunk/Jmol/src/org/jmol/ (5 files in 3 dirs): (log message trimmed)
14:13 CIA-34 jmol: version=11.6.RC2 bug fixes; help menu in console; Java permissions
14:13 CIA-34 jmol: # bug fix: Cs pointgroup not found
14:13 CIA-34 jmol: # bug fix: set echo DEPTH/IMAGE
14:13 CIA-34 jmol: # bug fix: workaround for Java 1.6.0_10 diallowing popup menu
14:13 CIA-34 jmol: # new feature: in Java 1.6.0_10, right-click activates the console, and the
14:13 CIA-34 jmol: # console has a menubar menu item "Jmol" that is the pop-up menu.
14:39 CIA-34 jmol: hansonr * r9690 /trunk/Jmol/src/org/jmol/ (5 files in 3 dirs):
14:39 CIA-34 jmol: version=11.6.RC2 point group tolerances
14:39 CIA-34 jmol: # new feature: set pointGroupDistanceTolerance (default 0.2 angstroms)
14:39 CIA-34 jmol: # new feature: set pointGroupLinearTolerance (default 8 degrees)
15:05 malick left #cdk
15:20 CIA-34 cdk: egonw * r11940 /cdk/branches/egonw-atowl/src/main/org/opensci​ence/cdk/atomtype/mapper/AtomTypeMapper.java: Better name for parameter and added missing JavaDoc
15:29 CIA-34 jmol: hansonr * r9691 /trunk/Jmol/src/org/jmol/ (g3d/Platform3D.java g3d/Text3D.java viewer/Jmol.properties): version=11.6.RC2 (b) # bug fix: image background transparency
15:30 CIA-34 cdk: egonw * r11941 /cdk/branches/egonw-atowl/src/main/org/ope​nscience/cdk/config/AtomTypeFactory.java: Added missing sybyl list
15:47 CIA-34 cdk: egonw * r11942 /cdk/branches/egonw-atowl/src/ (11 files in 7 dirs): Removed old atom type list
15:58 CIA-34 cdk: egonw * r11943 /cdk/branches/egonw-atowl/src/test/org​/openscience/cdk/NewCDKTestCase.java: Removed to unused imports of which I have not clue how those sneaked in
16:11 CIA-34 cdk: shk3 * r11944 /cdk/trunk/src/META-INF/te​st-fingerprint.cdkdepends: testdata needed for fingerprinter tests
16:21 CIA-34 cdk: shk3 * r11945 /cdk/trunk/src/test/org/openscience/cdk/fi​ngerprint/ExtendedFingerprinterTest.java: made all tests to test the reverse as well and added some comments
16:24 CIA-34 cdk: egonw * r11946 /cdk/branches/egonw-atowl/src/main/org/ope​nscience/cdk/dict/data/cdk-atom-types.owl: Added atom type recently added in trunk
16:27 CIA-34 cdk: egonw * r11947 /cdk/branches/egonw-atowl/src/test/org/opensci​ence/cdk/atomtype/CDKAtomTypeMatcherTest.java: Added extra assertion; fixed OWL path
16:36 CIA-34 cdk: egonw * r11948 /cdk/branches/egonw-atowl/src/test/org/opens​cience/cdk/config/AtomTypeFactoryTest.java: More extensive testing
16:37 CIA-34 cdk: egonw * r11949 /cdk/branches/egonw-atowl/src/main/org/ope​nscience/cdk/tools/CDKHydrogenAdder.java: Fixed OWL path :(
16:56 CIA-34 cdk: egonw * r11950 /cdk/branches/egonw-atowl/src/test/org/openscie​nce/cdk/atomtype/SybylAtomTypeMatcherTest.java: Applied request to use Iterator
17:00 CIA-34 cdk: egonw * r11951 /cdk/branches/egonw-atowl/src/test/org/opens​cience/cdk/config/AtomTypeFactoryTest.java: More testing
17:17 CIA-34 cdk: egonw * r11952 /cdk/branches/egonw-atowl/src/test/o​rg/openscience/cdk/aromaticity/CDKHu​eckelAromaticityDetectorTest.java: Fail early: the whole molecule should show some aromaticity
17:18 CIA-34 cdk: egonw * r11953 /cdk/branches/egonw-atowl/src/mai​n/org/openscience/cdk/dict/data/ (atom-types.owl cdk-atom-types.owl): Removed duplication
17:27 CIA-34 cdk: egonw * r11954 /cdk/branches/egonw-atowl/src/main/org/openscien​ce/cdk/config/atomtypes/OWLAtomTypeHandler.java: Fixed missing reading of planar3 hybridization
17:54 CIA-34 cdk: ospjuth * r11955 /cdk/trunk/META-INF/MANIFEST.MF: Set version to 1.1.0.20080807 to increment for Bioclipse releases.
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19:38 CIA-34 cdk: egonw * r11956 /cdk/branches/egonw-atowl/src/test/org/opens​cience/cdk/config/AtomTypeFactoryTest.java: A test for the PLANAR3 hybridization)
19:39 CIA-34 cdk: egonw * r11957 /cdk/branches/egonw-atowl/src/main​/org/openscience/cdk/aromaticity/C​DKHueckelAromaticityDetector.java: Robustified checking the pi bond count
20:25 CIA-34 cdk: egonw * r11958 /cdk/trunk/src/ (43 files in 20 dirs): Merged the atowl patch (cdk/branches/egonw-atowl)
20:30 Elatt joined #cdk
20:30 egonw hi Elatt
20:30 Elatt Evening. :)
20:31 egonw ubuntu packager?
20:31 Elatt Err, what?
20:31 egonw never mind :)
20:31 Elatt Ok. :p
20:34 CIA-34 cdk: egonw * r11959 /cdk/branches/egonw-atowl/: Patch applied to trunk; branch obsolete.
20:40 Elatt left #cdk
20:41 CIA-34 cdk: egonw * r11960 /cdk/trunk/src/ (data/ test/data/): Moved data into the test folder, as discussed on cdk-devel
20:42 CIA-34 cdk: egonw * r11961 /cdk/trunk/build.xml: Updated for src/data -> src/test/data move
21:03 CIA-34 cdk: egonw * r11962 /cdk-gpl/: Moved code to http://code.google.com/p/chemojava/.
21:03 zarah CIA-34's link is also http://tinyurl.com/6amohn
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