Camelia, the Perl 6 bug

IRC log for #cdk, 2008-08-28

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All times shown according to UTC.

Time Nick Message
04:52 carsten joined #cdk
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06:51 jpansanel moin
06:51 zarah hi jpansanel
06:57 egonw hi jpansanel
07:11 jonalv joined #cdk
07:24 CIA-35 cdk: egonw * r12110 /cdk/trunk/.project: Does this create a branch on SVN?
07:38 CIA-35 cdk: egonw * r12111 /cdk/trunk/.project: No, commiting a local git branch does not results in a SVN cdk/branches branc :(
07:43 thomas_ku joined #cdk
07:58 thomas_ku moin
07:58 zarah hi thomas_ku
07:58 thomas_ku egonw: around?
07:59 egonw yes
08:00 thomas_ku egonw:can I render molecules (2D) with the current trunk version?
08:06 egonw there is a prelimenary renderer
08:06 maclean joined #cdk
08:07 egonw thomas_ku: read: no, not on production level
08:08 thomas_ku ok any idea how I can get a rendered mol
08:09 egonw there is a renderer
08:09 egonw better that than nothing I guess
08:10 thomas_ku but I can't find example code for it
08:10 maclean I have example code, I just can't find it. moment please.
08:10 thomas_ku ok thanks
08:11 thomas_ku otherwise I think about using the "old" renderer code (than I would copy the old one into cdk-taverna until we get a fully working new one)
08:12 maclean Oh, well, I think that my example /was/ using the old renderer code.
08:12 egonw not a bad idea, but beware of the amount of woth
08:13 maclean It was in the ExportHandler for Bioclipse/JCP
08:14 maclean Ah. And I never checked it in, and I think it's now gone. I haven't woken up yet...
08:14 thomas_ku example and productive code for the old renderer I have already
08:14 thomas_ku egonw: what does woth mean?
08:15 maclean I thought that the new one was going to use the same Renderer2D idea anyway.
08:17 egonw 'woth' ?
08:18 maclean "<egonw> not a bad idea, but beware of the amount of woth"
08:19 egonw ah...
08:19 egonw 'work'
08:19 maclean "Wroth", perhaps? As in, "waxing wroth".
08:19 maclean :)
08:20 thomas_ku ah ok thanks
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15:51 CIA-35 cdk: thomaskuhn * r12133 /cdk-taverna/trunk/src/test/resources/data/weka/ (5 files): Add test data for weka em and simple k means clustering
15:56 CIA-35 cdk: thomaskuhn * r12113 /cdk-taverna/trunk/src/main/java/org/o​penscience/cdk/applications/taverna/ba​sicutilities/FileNameGenerator.java: Remove a doubled File.separator
15:56 CIA-35 cdk: thomaskuhn * r12114 /cdk-taverna/trunk/src/main/java/org/open​science/cdk/applications/taverna/database​/pgchem/GetSelectedMoleculesFromDB.java: Add a new worker. This worker fetches molecules from a database for a given moleculeid
15:56 CIA-35 cdk: thomaskuhn * r12115 /cdk-taverna/trunk/src/main/java/org/op​enscience/cdk/applications/taverna/data​base/pgchem/InsertMoleculeIntoDB.java: Close the database connection after the usage. Forgotten that before.
15:56 CIA-35 cdk: thomaskuhn * r12116 /cdk-taverna/trunk/src/main/java/org​/openscience/cdk/applications/tavern​a/io/iterative/IteratingReader.java: Increase the number of molecules to read per iteration from 50 to 100
15:56 CIA-35 cdk: thomaskuhn * r12118 /cdk-taverna/trunk/src/main/java/org/ope​nscience/cdk/applications/taverna/jchemp​aint/action/JChemPaintEditorAction.java: Commented out this worker. The current cdk trunk does not support JChempaint. Have to wait for a new JCP release
15:57 CIA-35 cdk: thomaskuhn * r12117 /cdk-taverna/trunk/src/main/java/org​/openscience/cdk/applications/tavern​a/jchempaint/JChemPaintEditor.java: Commented out this worker. The current cdk trunk does not support JChempaint. Have to wait for a new JCP release
15:57 CIA-35 cdk: thomaskuhn * r12119 /cdk-taverna/trunk/src/main/java/org/opens​cience/cdk/applications/taverna/renderers/ (3 files): Change the file name generation to avoid a problems.
15:57 CIA-35 cdk: thomaskuhn * r12120 /cdk-taverna/trunk/src/main/java/or​g/openscience/cdk/applications/tave​rna/renderers/Draw2DStructure.java:
15:57 CIA-35 cdk: Updated to the current cdk version. Many things have change a bit. Now using the
15:57 CIA-35 cdk: old renderer which is for now located within the cdk-taverna project. Because it
15:57 CIA-35 cdk: was removed from the cdk. It is now located here until the cdk provides a
15:57 CIA-35 cdk: functional molecule 2d renderer
15:57 CIA-35 cdk: thomaskuhn * r12121 /cdk-taverna/trunk/src/main/jav​a/org/openscience/cdk/renderer/ (5 files in 2 dirs):
15:57 CIA-35 cdk: Updated to the current cdk version. Many things have change a bit. Now using the
15:57 CIA-35 cdk: old renderer which is for now located within the cdk-taverna project. Because it
15:57 CIA-35 cdk: was removed from the cdk. It is now located here until the cdk provides a
15:57 CIA-35 cdk: functional molecule 2d renderer
15:57 CIA-35 cdk: thomaskuhn * r12125 /cdk-taverna/trunk/src/test/java/or​g/openscience/cdk/applications/tave​rna/qsar/VectorGenerationTest.java: Removed a bug regarding the file creation.
15:57 CIA-35 cdk: thomaskuhn * r12123 /cdk-taverna/trunk/src/test/java/org/open​science/cdk/applications/taverna/database​/pgchem/InsertQSARResultsIntoDBTest.java: Deletes the old qsar vectors within the database before inserting the new ones. add some comment
15:57 CIA-35 cdk: thomaskuhn * r12124 /cdk-taverna/trunk/src/test/java/org/​openscience/cdk/applications/taverna/​jchempaint/JChemPaintEditorTest.java: Commented out this worker. The current cdk trunk does not support JChempaint. Have to wait for a new JCP release
16:01 CIA-35 cdk: thomaskuhn * r12126 /cdk-taverna/trunk/src/test/java/org/op​enscience/cdk/applications/taverna/qsar​/model/weka/EMClusterWorkerTest.java: Renamed the test methods. copy and paste error
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17:23 CIA-39 cdk: thomaskuhn * r12128 /cdk-taverna/trunk/src/test/java/or​g/openscience/cdk/applications/tave​rna/renderers/PdfCreationTest.java: Add another unit test
17:29 CIA-39 cdk: thomaskuhn * r12130 /cdk-taverna/trunk/src/main/java/org/o​penscience/cdk/applications/taverna/qs​ar/model/ART2AClassificator/action/:
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