Camelia, the Perl 6 bug

IRC log for #cdk, 2008-09-19

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All times shown according to UTC.

Time Nick Message
05:07 thomas_ku joined #cdk
05:22 thomas_ku moin
05:23 zarah hi thomas_ku
05:42 jbrefort joined #cdk
06:38 rojasm joined #cdk
07:50 jonalv joined #cdk
08:06 jonalv Hm new and old problems with cdk-1.2.x branch
08:06 jonalv is someone working with it?
08:06 carsten joined #cdk
08:07 jonalv org.openscience.cdk.AssociationTest row 134 The method assertEquals(Object, Object) is ambiguous for the type Assert
08:07 jonalv and
08:08 jonalv org.openscience.cdk.charges.StabilizationCharges row 83 Unreachable catch block for CDKException. This exception is never thrown from the try statement body
08:12 rojasm hi
08:12 zarah hi rojasm
08:12 rojasm I will repair for Stabilizationcharge problem
08:13 rojasm do you know what is the differences between the cdk-1.0 and cdk-1.2.
08:13 rojasm ?
08:13 jonalv not in detail no
08:13 rojasm or why we try to maintain cdk-1.0 still
08:13 jonalv jchempaint
08:14 jonalv jchempaint in 1.2 is not ready for prime time. Actually it's nowhere near ready at all
08:15 jonalv brb
08:16 CIA-14 cdk: miguelrojasch * r12347 /cdk/branches/cdk-1.2.x/src/main/org/opensci​ence/cdk/charges/StabilizationCharges.java: Removed catch unnecessary.
08:17 CIA-14 cdk: miguelrojasch * r12348 /cdk/branches/cdk-1.2.x/src/test/org/​openscience/cdk/AssociationTest.java: added to the test deviation error.
08:19 jonalv rojasm++
08:20 rojasm cdk-1.2 free of fails
08:20 jonalv good :)
08:25 jbrefort joined #cdk
08:44 jbrefort joined #cdk
08:50 jpansanel moin
08:50 zarah hi jpansanel
08:51 jonalv hi jpansanel
08:52 jpansanel hi jonalv
09:45 shk3 joined #cdk
10:53 thomas_ku joined #cdk
12:13 jbrefort joined #cdk
13:33 jbrefort joined #cdk
13:54 egonw joined #cdk
13:55 egonw moin
13:55 zarah hi egonw
13:59 jbrefort joined #cdk
14:05 CIA-14 cdk: shk3 * r12349 /cdk/trunk/src/test/org/openscience/cdk/mo​deling/builder3d/ModelBuilder3dTest.java: the x got in by accident, obviously
14:45 egonw mmm... no CIA :(
14:45 egonw shk3: ping
14:47 egonw rojasm: ping
14:47 shk3 hii egonw
14:47 egonw hi shk3
14:47 egonw no internet at home yet
14:47 shk3 sorry, need to had to the loo urgently
14:47 shk3 will be back
14:47 egonw yes, that's importnat :)
14:47 * egonw has to leave in 10minutes
14:48 egonw but don't make that stop you from going to the loo :)
14:49 jonalv egonw: while we wait for him. Do you know anything about when the new Jumbo might arrive?
14:49 egonw no
14:49 egonw but you were able to make a custom version yourself, not?
14:50 jonalv perhaps I shoudl just go ahead an change the one in cdk but that feels like it will bring problems next time jumbo gets updated...
14:50 shk3 are you already in uppsala
14:50 shk3 ?
14:50 egonw shk3: yes
14:50 egonw jonalv: no, please upgrade
14:50 shk3 you enjoy it?
14:51 egonw not really
14:51 egonw :)
14:51 egonw still too much in admin mode
14:51 egonw lot's of things to arrange
14:51 egonw and no internet at home
14:51 egonw but we have a great house
14:51 egonw have not started at the uni yet...
14:51 jonalv egonw: I should switch far file in cdk? But the fix really needs to get into the jumbo repo...
14:51 egonw though at the department now
14:51 shk3 ah, so you start in october?
14:51 egonw shk3: yes
14:52 shk3 I am looking forward to you working on jcp
14:53 egonw yeah, same here
14:53 egonw shk3: I solved a atom typing problem...
14:53 egonw but did not have all the info for the problem you mentioned...
14:53 egonw no internet at home, which makes this difficult...
14:53 shk3 yes
14:53 shk3 we will wait
14:54 shk3 I am unsure about the cause or spread or whatever of the problem
14:54 shk3 just get the impression, it could be a major one
14:54 egonw did you file a bug report, or unit test?
14:55 shk3 there is a bug report, on which I commented
14:55 shk3 the problem can easily be reproduced in the modelbuilder3d tests
14:56 shk3 change line 171 of
14:56 shk3 TemplateHandler3D from BitSet ringSystemFingerprint = new
14:56 shk3 Fingerprinter().getFingerprint(queryRingSystem);
14:56 shk3 to BitSet ringSystemFingerprint = new
14:56 shk3 Fingerprinter().getFingerprint(ringSystems); and run the ModelBuilder3D
14:56 shk3 tests. four of them fail with this problem.
14:56 egonw ok, excellent...
14:56 egonw that's enough info to get me started, thanx
14:57 shk3 the bug is #1965254
14:57 egonw ok, thanx
14:57 egonw will check that this weekend
14:57 shk3 I hope you get things sorted soon with your house and job - moving is always a lot of trouble
14:58 egonw thanx
14:58 egonw got to leave now! cu later!
14:58 shk3 do you learn swedish?
14:59 egonw I hope to :)
15:01 CIA-14 cdk: jonalv * r12362 /cdk/branches/cdk-1.2.x/ (4 files in 3 dirs): Changed to build of jumbo with a fix by me. Hopefully this shouldn't be a permanent solution
15:06 shk3 jonalv: you worked on the webservices plugin in bc1, right?
15:08 jonalv uhm guys... did I just commit too much things in cdk?
15:09 jonalv shk3: no
15:09 jonalv I am very much looking at the service pluginj in Bioclispe 2 right now though?
15:09 jonalv can that be of any help?
15:09 jonalv :)
15:12 shk3 no idea
15:12 shk3 I need the axis libraries in the nmrshiftdb plugin
15:12 shk3 (which i am porting to bc2)
15:13 shk3 they came from webservices plugin in bc1
15:13 shk3 I could port that as well, obviously
15:14 jonalv hm, I have just been handed the service plugin in bc2 rihgt now. I haven't really groqued the code. olas wrote it but he doesn't have time for everything... I guess you could ask him...
15:16 shk3 and that contains axis stuff?
15:17 jonalv I don't think it does yet no...
15:17 shk3 hm, then we might be interested in the webservices plugin anyway
15:17 shk3 will talk to ola
17:04 carsten joined #cdk
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