Camelia, the Perl 6 bug

IRC log for #cdk, 2008-10-01

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All times shown according to UTC.

Time Nick Message
05:05 bag joined #cdk
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07:51 rojasm moin
07:51 zarah hi rojasm
07:54 CIA-59 cdk: egonw * r12500 /cdk/branches/cdk-1.2.x/src/test/or​g/openscience/cdk/tools/manipulator​/AtomContainerComparatorTest.java: Split out tests, by functionality tested
07:54 CIA-59 cdk: egonw * r12501 /cdk/branches/cdk-1.2.x/src/main/org/openscience/c​dk/tools/manipulator/AtomContainerComparator.java: Reverted patch 10462, to reenable functionality beyond the scope of Comparator<IAtomContainer> (closes #??????, now I only need a tool to offline browse/edit bug reports)
07:54 CIA-59 cdk: egonw * r12502 /cdk/branches/cdk-1.2.x/.gitignore: Ignore more autogenerated files and dirs
07:55 CIA-59 cdk: egonw * r12503 /cdk/branches/cdk-1.2.x/src/test/org/o​penscience/cdk/io/HINReaderTest.java:
07:55 CIA-59 cdk: Added unit test for bug #2126904: problem with connectivity seems to be in the
07:55 CIA-59 cdk: fact that the HINReader does not read all bonds... I count 118 bond definitions
07:55 CIA-59 cdk: in the HIN file, duplicated, so 59 bonds. The HINReader only find 53 instead.
07:55 CIA-59 cdk: That could explain the disconnectivity problem...
07:58 Topic for #cdkis now The Chemistry Development Kit (http://cdk.sf.net) | JUnit CDK 1.2.x: 7760, 75 fails + 38 errors (1.46%) | CDK 1.0.x TODO: see http://cdk.sf.net/wiki/ | Logs at http://moritz.faui2k3.org/​irclog/out.pl?channel=cdk | CDK News paper online on pharmacophores: http://www.cdknews.org/ | CDK News Feed: http://beta.friendfeed.com/ro​oms/chemistry-development-kit
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10:17 CIA-59 cdk: reyez * r12504 /cdk/branches/reyez-pdbstuff/src​/test/data/pdb/binding_site.pdb:
10:48 egonw ok, no idea what is going to happen now...
10:48 egonw git is cool... git-svn is less stable :(
10:48 gilleain Uh-oH.
10:48 * gilleain prepares for commit-wave
10:49 CIA-59 cdk: egonw * r12507 /cdk/trunk/ (3 files in 3 dirs): Ignore autogenerated files in git too
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10:56 CIA-59 cdk: egonw * r12508 /cdk/trunk/ (14 files in 11 dirs): Merged commits from cdk1.2.x
10:56 egonw phew
10:56 egonw that went fairly well :)
11:00 gilleain Seems to have worked.
11:01 egonw and GitHub is up to date too :)
11:27 thomasku moin
11:27 zarah hi thomasku
12:34 CIA-59 cdk: reyez * r12509 /cdk/branches/reyez-pdbstuff/src/test/or​g/openscience/cdk/io/PDBReaderTest.java:
12:36 gilleain joined #cdk
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16:02 CIA-59 cdk: shk3 * r12510 /cdk/branches/cdk-1.0.x/src/org/opens​cience/cdk/applications/jchempaint/re​sources/text/JCPBundle_es.properties: updated translations by angel h
17:46 CIA-59 cdk: rajarshi * r12512 /cdk/branches/cdk-1.2.x/src/main/org​/openscience/cdk/io/HINReader.java: Fixed code to properly bond atoms in the HIN file. Fixes bug 2126904
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