Camelia, the Perl 6 bug

IRC log for #cdk, 2008-10-02

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All times shown according to UTC.

Time Nick Message
05:38 bag joined #cdk
06:28 rojasm joined #cdk
07:02 egonw joined #cdk
07:18 egonw moin
07:18 zarah hi egonw
07:42 jonalv joined #cdk
08:10 jbrefort joined #cdk
08:51 egonw_ joined #cdk
09:02 gilleain joined #cdk
09:25 shk3 joined #cdk
09:38 egonw JChemPaint development chatting ongoing on #jchempaint
10:31 thomasku joined #cdk
10:33 CIA-59 cdk: egonw * r12519 /cdk/branches/jchempaint-primary/: Created the primary development branch for the JChemPaint refactoring efforts, where everyone's patches will be merged/intergrated before the get merged into trunk
10:35 thomasku moin
10:35 zarah hi thomasku
10:40 CIA-59 cdk: egonw * r12520 /cdk/branches/gilleain-jchempaint/: Set up branch for gilleain to upload his work to, which we can then integrate to jchempaint-primary
10:43 CIA-59 cdk: egonw * r12521 /cdk/branches/goglepox-jchempaint/: Set up branch for arvid to upload his work to, which we can then integrate to jchempaint-primary
10:46 gilleain ta.
10:52 jonalv joined #cdk
11:00 CIA-59 cdk: shk3 * r12522 /cdk/branches/cdk-1.0.x/ (3 files in 3 dirs): updated email for mailing list, removed unused menu item
11:12 CIA-59 cdk: shk3 * r12523 /cdk/branches/cdk-1.0.x/src/org/openscience/cdk/ap​plications/jchempaint/dialogs/LicenseDialog.java: updated copyright notice
12:07 thomasku egonw: do you know an app which allows an tabular view on an sdf file?
12:07 thomasku I remember a mail on one of the lists but can't find it anymore...
12:07 CIA-59 cdk: goglepox * r12524 /cdk/branches/goglepox-jchempaint/sr​c/main/org/openscience/cdk/renderer/ (13 files in 3 dirs): New rendering architecture
12:11 egonw bioclipse2
12:12 egonw http://bioclipse.blogspot.com/2008/0​8/bioclipse-20-alpha01-released.html
12:15 thomasku I have already tried it but got lots of error messages and a table with no molecules shown...
12:15 CIA-59 cdk: goglepox * r12525 /cdk/branches/goglepox-jchem​paint/META-INF/MANIFEST.MF: Exports new packages
12:15 egonw thomasku: please discuss those issues on #bioclipse
12:16 gilleain joined #cdk
12:16 thomasku that not what I wanted to discuss now I wantet to know if you could remember the mail or the program which was able to show many molecules in a table
12:20 egonw I think there are several
12:20 egonw google for chemical spread sheet
12:20 zarah egonw: I can't do that; complain with masak and jonalv
12:20 egonw zarah: shut up. I did not ask you...
12:20 zarah egonw: :)
12:20 egonw zarah: it really is not that hard... googling...
12:20 zarah egonw: are you making fun of me?
12:20 egonw yes, I am
12:21 gilleain this:
12:21 gilleain http://cdk.svn.sourceforge.net/viewvc/cdk/cdk/b​ranches/cdk-1.0.x/src/org/openscience/cdk/appli​cations/swing/MoleculesTable.java?view=markup
12:21 gilleain ?
12:22 CIA-59 cdk: goglepox * r12526 /cdk/branches/goglepox-jchempaint/sr​c/main/org/openscience/cdk/renderer/ (11 files in 3 dirs): Added copyright statement
12:22 CIA-59 cdk: shk3 * r12527 /cdk/branches/cdk-1.0.x/src/org/openscience/​cdk/applications/jchempaint/resources/text/ (JCPGUI_applet.properties JCPGUI_stable.properties): synchronized menus of application and applet
12:33 jpansanel moin
12:33 zarah hi jpansanel
12:36 jonalv thomasku: I am sure that Gpox or someone working on the SDF editor in Bioclipse would value input from your problems...
12:36 thomasku yes I will send information about the problem to the list
12:37 thomasku just trying another bioclipse version....
12:38 jonalv thomasku: do you happend to have Bioclipse running from trunk?
12:39 thomasku no I have downloaded the version from sf
12:40 thomasku an I get lost of error messages if I try to load an sdf file
12:41 thomasku is there a log file which I could send you with all information about the problem?
12:42 jonalv yes, unsure about where it is though. It's different on different OS's
12:42 jonalv what system are you on?
12:44 thomasku vista 64
12:44 thomasku I think I found it
12:45 jonalv great because I ahve no idea where it is. I did not write that part of Bioclipse... :)
12:45 thomasku is it in the .metadata folder the file with the name .log
12:45 jonalv sounds reasonable
12:45 thomasku ok will sent it to the list
12:45 jonalv k
13:14 CIA-59 cdk: egonw * r12528 /cdk/branches/cdk-1.2.x/src/main/org/ope​nscience/cdk/io/cml/CMLCoreModule.java: Topy in comments
13:14 CIA-59 cdk: egonw * r12529 /cdk/branches/cdk-1.2.x/src/main/org/ope​nscience/cdk/io/cml/CMLCoreModule.java: Fixed implicit hydrogen count (patch by Rajarshi)
13:15 CIA-59 cdk: egonw * r12530 /cdk/branches/cdk-1.2.x/src/te​st/org/openscience/cdk/io/cml/ (CML23FragmentsTest.java cml23TestFramework.xml): Added test for bug #2142400
13:15 CIA-59 cdk: egonw * r12531 /cdk/branches/cdk-1.2.x/src/main/org/ope​nscience/cdk/io/cml/CMLCoreModule.java: Convert CML into CDK hydrogenCounts (closes #2142400)
14:22 thomasku joined #cdk
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15:45 CIA-59 cdk: shk3 * r12535 /cdk/branches/cdk-1.0.x/ (4 files in 3 dirs): save as svg works
16:23 CIA-59 cdk: gilleain * r12536 /cdk/branches/gilleain-jchempaint/src/m​ain/org/openscience/cdk/renderer/tree/ (. KDTree.java Tree.java TreeTest.java): Testing the idea of using a KDTree (or similar BSP technique) to make highlighting (or indeed, any point search) faster for large molecules.
16:48 jbrefort joined #cdk
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22:00 CIA-59 cdk: gilleain * r12537 /cdk/branches/gilleain-jchempaint/src/m​ain/org/openscience/cdk/renderer/tree/ (14 files in 2 dirs): Initial check in of alternative renderer.
22:02 bag_ joined #cdk

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