Camelia, the Perl 6 bug

IRC log for #cdk, 2008-10-13

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All times shown according to UTC.

Time Nick Message
05:48 jbrefort joined #cdk
06:03 bag joined #cdk
07:08 egonw joined #cdk
07:15 sneumann left #cdk
07:19 rojasm joined #cdk
07:21 rojasm moin all
07:21 zarah hi rojasm
07:24 egonw hi rojasm
07:27 rojasm hi egonw!
07:28 rojasm I am trying to follow your git blog tutorial to merge finally the last stuff of reactions
07:29 egonw ah... good...
07:29 rojasm yesterday I was cloning to my home. Buff 5 hours
07:29 egonw make sure to do a 'git svn rebase' just prior to the merge
07:29 egonw 5 hours... not bad
07:29 egonw took ages too here...
07:30 egonw that's because Git is getting the full CDK history...
07:30 rojasm yes!
07:33 rojasm not good!
07:33 rojasm fatal: ambiguous argument 'HEAD': unknown revision or path not in the working tree.
07:33 rojasm Use '--' to separate paths from revisions
07:33 rojasm log --no-color --first-parent HEAD: command returned error: 128
07:33 rojasm after git svn rebase
07:33 rojasm mmm
07:34 rojasm or my cdk is empty!
07:35 rojasm or good! again to do the same thing
07:36 egonw :(
07:37 egonw I actually did it three times in total... :)
07:39 rojasm ok! than I try happily again :)
07:41 egonw yeah, and once it worked... copy it a couple of times...
07:41 egonw onto USB sticks, other hard drives
07:41 egonw etc
07:41 egonw so that you will never have to git svn checkout every again :)
07:42 egonw rojasm: do you have unchecked in code?
07:42 egonw if not, I could put up your reaction branch on github.com
07:44 rojasm I wanted first to make a new copy of trunk and than merge from the old branch-reactions to the new branch-newReaction
07:44 rojasm because the branch-reactions is very old
07:45 egonw yes, that sounds like an excellent plan
07:48 rojasm I don't see the difference between github.com and sourceforge!
07:51 egonw github.com is used as mirror using Git, that's all
07:53 rojasm the same like we have here in CDK irc then
08:19 jonalv joined #cdk
09:12 egonw @msg shk3 Maybe jcp.sf.net can point to: http://apps.sourceforge.net/mediaw​iki/cdk/index.php?title=JChemPaint
09:12 zarah egonw's link is also http://tinyurl.com/3pt7od
09:12 zarah egonw: You have no new messages.
09:12 egonw @tell shk3 Maybe jcp.sf.net can point to: http://apps.sourceforge.net/mediaw​iki/cdk/index.php?title=JChemPaint
09:12 zarah egonw's link is also http://tinyurl.com/3pt7od
09:12 zarah Consider it noted.
09:15 carsten joined #cdk
09:39 gilleain joined #cdk
11:12 egonw google IAtomContainer site:cheminfo.informatics.indiana.edu
11:12 zarah egonw: http://cheminfo.informatics.indiana.edu/​~rguha/code/java/nightly/api/org/opensci​ence/cdk/interfaces/IAtomContainer.html
11:14 gilleain Now all you need is a "javadoc" command so that you can say "javadoc IAtomContainer addAtom" and zarah returns "void addAtom(IAtom atom)"
11:15 gilleain :)
11:15 egonw gilleain: yeah, have been thinking about that...
11:16 egonw olas posted a link about writing IRC bots with Eclipse the other day
11:16 gilleain Getting distracted... :)
11:16 egonw yeah, i;ve been trying to do something useful for 4 hours now...
11:17 egonw no luck :(
11:23 CIA-14 cdk: miguelrojasch * r12613 /cdk/branches/miguelrojasch-reactions/: Copied new branch.miguelrojasch-reactions.
11:29 malick joined #cdk
11:41 rojasm by me git it doesn't work! should not it create a directory cdk full of the projects? doing git svn clone https://cdk.svn.sourceforge.net/svnroot/cdk/cdk/ -T trunk -b branches -t tags
11:42 rojasm it creates a cdk but its empty
11:44 rojasm if I write "git branch -r", I see only $trunk@10369
11:45 rojasm but nothing about the branches and tags
11:46 egonw mom
11:48 rojasm I write the "git svn fetch"
11:48 rojasm and looks it starts to add more things
11:48 rojasm mmm
11:48 egonw no idea why you did not get anything after the clone
11:49 egonw IIRC, I did have trunk after doing that..
11:49 egonw but git svn fetch is good
11:49 egonw what do you get if you type:
11:49 egonw git branch
11:49 egonw ?
11:49 egonw that should return: * master
11:49 rojasm ya, but it doesn't
11:49 rojasm :(
11:50 egonw weird, and annoying
11:50 rojasm I will wait until the above process is finished
11:50 egonw yes
11:50 egonw "git svn fetch" is good
11:51 egonw which git version are you using?
11:51 egonw ii  git-svn                       1:1.5.4.3-1ubuntu2            fast, scalable, distributed revision control system (svn interoperability)
11:51 egonw ii  git-core                      1:1.5.4.3-1ubuntu2            fast, scalable, distributed revision control system
11:51 rojasm git version 1.5.4.3
11:51 egonw mmm...
11:51 egonw same is me
11:52 rojasm ack thing of live
11:52 rojasm will see
11:54 sneumann joined #cdk
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12:10 CIA-14 cdk: egonw * r12615 /cdk/branches/egonw-pka/: Branch with the code backing up my pKa prediction blog: http://chem-bla-ics.blogspot.com/2008/10/p​ka-prediction-or-how-to-convert-jcim.html
12:10 zarah CIA-14's link is also http://tinyurl.com/5344ho
12:11 sneumann \msg shk3
12:14 rojasm what I see is a "r497 = 7b0e32fc1602527000fd78a371cbbb565b6b727e (tags/CDK20050826@4803)"
12:14 rojasm this r497 is the revision?
12:15 rojasm oh good we have now r12613
12:19 egonw yes, this looks good
12:19 rojasm it is strange. The git svn fetch finish with
12:19 rojasm r563 = ea6aed9c9a5062a946a9a70aa35ed89b3e0e63af (tags/CDK20050826@4803)
12:20 rojasm not more
12:20 rojasm :(
12:20 egonw that's not good
12:20 rojasm my be we have some firewall
12:20 rojasm that close after too much downloading
12:21 egonw possibly
12:21 egonw what happens if you type it again?
12:21 rojasm /cdk/tags/CDK20050826/cdk, 4803
12:21 rojasm Initializing parent: tags/CDK20050826@4803
12:21 rojasm Found branch parent: (tags/CDK20050826@10372) ea6aed9c9a5062a946a9a70aa35ed89b3e0e63af
12:21 rojasm Following parent with do_switch
12:22 egonw ok, does not sound bad
12:22 rojasm starts to add
12:22 rojasm one moment I don't see any rev yet
12:27 rojasm r4804 = d8c674ad31a7e3ce71536085492d6579086e70fb (tags/CDK20050826@10372) Also it is doing some thing
12:34 * egonw has to leave in about 25 minutes
12:34 CIA-14 cdk: egonw * r12616 /cdk/branches/egonw-pka/ (6 files in 3 dirs): Merge branch 'addPKaPrediction' into addMyPkAStuff
12:34 shk3 egonw: did you already migrate wiki to mediawiki at sf?
12:34 egonw the whole?? hahahah
12:34 egonw no
12:35 egonw there is much to migrate...
12:35 shk3 I saw some content
12:35 shk3 what are the plans?
12:35 shk3 can I help?
12:35 egonw yeah, I think Chris and that Spanish guy did, whose name I just forgot...
12:35 egonw yes, I think so...
12:35 egonw but we need to coordinate things...
12:35 shk3 that's why I am asking
12:35 egonw that's why I emailed...
12:36 egonw I think what would be handiest is to pick a date on which we transfer everything...
12:36 egonw so that we can synch/coordinate over IRC
12:37 shk3 we should declare a lock on all other wikis/sites
12:37 shk3 btw, plone is currently running
12:37 shk3 so we check there
12:51 CIA-14 cdk: egonw * r12617 /jchempaint/trunk/.classpath: Fixed .classpath: removed non-existing src paths
12:52 CIA-14 cdk: egonw * r12618 /jchempaint/trunk/.gitignore: Ignore autogenerated stuff in git
12:53 rojasm finished with r89 = 5f360840b7d16bde8da58a6b627fbc803c27505b (tags/cdk-0.99.1@7928)
12:53 rojasm and with "git branch -r"
12:53 egonw rojasm: got to now
12:53 egonw try this:
12:53 egonw git checkout master
12:53 egonw and see what that does
12:53 egonw or try this:
12:53 rojasm ok
12:53 egonw git checkout -b my-local-1.2 cdk-1.2.x
12:54 egonw the latter should make a copy of the SVN branch cdk-1.2.x into the git branch my-local-1.2
12:54 egonw I'll help tomorrow
13:37 jpansanel moin
13:37 zarah hi jpansanel
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14:42 sneumann ping shk3
14:42 sneumann Do you need any specific eclipse version
14:42 sneumann for the mzData plugin ?
14:43 sneumann and you need model + edit + editor ?
14:55 shk3 eclipse would be 3.4, I think
14:55 shk3 we need 3.4 for bc2 anyway
14:55 shk3 I need everything which is needed ;-)
14:55 shk3 I want to use the parsing in the spectrum plugin
14:56 shk3 (that was done in bc1, so it is possible)
14:56 shk3 we had 3 plugins in bc1, btw
14:56 shk3 for mzdata
15:21 sneumann that was model + edit + editor
15:22 sneumann I'll try to produce them on my laptop later this week
15:22 sneumann How will you get their source ?
15:22 sneumann mail ?
15:28 shk3 would be easiest
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17:12 carsten joined #cdk
18:45 CIA-14 cdk: goglepox * r12619 /cdk/branches/goglepox-jchempaint/sr​c/main/org/openscience/cdk/renderer/ (12 files in 3 dirs):
18:45 CIA-14 cdk: Changed module structure.
18:45 CIA-14 cdk: Collapsed all line elements in to one.
21:13 rojasm \msg egonw http://excess.org/article/​2008/07/ogre-git-tutorial/
21:13 zarah rojasm's link is also http://tinyurl.com/6ot2qr
21:14 rojasm egonw interesting presentation for git basis

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