Camelia, the Perl 6 bug

IRC log for #cdk, 2008-10-28

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All times shown according to UTC.

Time Nick Message
01:35 CIA-36 cdk: rajarshi * r12841 /cdk/branches/cdk-1.2.x/src/META-I​NF/test-qsarmolecular.cdkdepends: updated dependency
06:13 egonw joined #cdk
06:25 carsten joined #cdk
08:45 CIA-36 cdk: goglepox * r12842 /cdk/branches/goglepox-jchempaint/sr​c/main/org/openscience/cdk/renderer/ (12 files in 3 dirs): Added copyright statements
09:20 thomasku joined #cdk
09:20 thomasku moin
09:20 zarah hi thomasku
09:24 egonw hi thomasku
09:30 thomasku hi egonw
09:53 jpansanel moin
09:53 zarah hi jpansanel
10:01 egonw hi jpansanel
10:03 CIA-36 cdk: egonw * r12843 /cdk/branches/cdk-1.2.x/src/main/org​/openscience/cdk/io/PMPReader.java: Fixed testing of class types for NNChemFile
10:04 CIA-36 cdk: egonw * r12844 /cdk/branches/cdk-1.2.x/src/test/org/ope​nscience/cdk/io/MDLV3000ReaderTest.java: Proper test file
10:21 jpansanel egonw : good news, I succeed with my interview last week at the CNRS
10:22 egonw happy to hear that
10:23 egonw so, back to Paris
10:23 egonw ?
10:24 jpansanel no
10:24 jpansanel back to Strasbourg !
10:27 egonw ah :)
10:43 CIA-36 cdk: egonw * r12845 /cdk/branches/cdk-1.2.x/src/main/org/o​penscience/cdk/io/MDLV2000Reader.java: Fixed a source of NPEs in rare situations
10:44 CIA-36 cdk: egonw * r12846 /cdk/branches/cdk-1.2.x/src/test/org/opens​cience/cdk/io/cml/CML23FragmentsTest.java: Fixed test to compare doubles with an error margin
10:44 CIA-36 cdk: egonw * r12847 /cdk/branches/cdk-1.2.x/src/test/org/op​enscience/cdk/io/INChIReaderTest.java: Overwrite test to actually expect an exception
10:51 CIA-36 cdk: egonw * r12848 /cdk/branches/cdk-1.2.x/src/test/org/opensci​ence/cdk/io/SimpleChemObjectReaderTest.java: Better feedback
10:52 CIA-36 cdk: egonw * r12849 /cdk/branches/cdk-1.2.x/src/test/org/op​enscience/cdk/io/MDLRXNReaderTest.java: Fixed set up method: use proper test and reader
11:01 dleidert joined #cdk
11:05 CIA-36 cdk: egonw * r12850 /cdk-eclipse/trunk/src/main/net/sf/cdk/t​ools/eclipse/EclipseProjectCreator.java: Don't add J2SE-1.5, or any required execution environment, as it gives trouble in OS/X (as always)
12:23 jpansanel does somebody know a good SVN server for the writting of publications ?
12:24 jpansanel I'm writting a new publication with docbook and another author want to access this article also to complete the article
12:24 jpansanel SVN seems to be a good solution, however, I don't find a good service provider for this purpose.
12:31 egonw do you have a machine where you can create new SSH accounts?
12:32 egonw then you could set up a service yourself
12:35 jpansanel egonw: I does not have such a machine
12:35 jpansanel but in few month, yes ;)
13:10 rguha joined #cdk
13:21 carsten joined #cdk
13:33 jpansanel egonw : I've found opensvn.csie.org
14:26 CIA-36 cdk: goglepox * r12851 /cdk/branches/goglepox-jchempaint/sr​c/main/org/openscience/cdk/renderer/ (3 files in 2 dirs): Added WedgeElement to rendering visitor.
15:26 egonw joined #cdk
15:38 shk3 joined #cdk
16:11 CIA-36 cdk: egonw * r12852 /cdk/branches/cdk-1.2.x/src/mai​n/org/openscience/cdk/atomtype/ (SybylAtomTypeMatcher.java mapper/AtomTypeMapper.java):
16:11 CIA-36 cdk: The sybyl atom type and map lists are not in the core module, as the factories,
16:11 CIA-36 cdk: but in atomtype. This is no problem when both are in the same classpath, which
16:11 CIA-36 cdk: is not the case for Bioclipse. By using InputStream getResourceAsStream() from
16:11 CIA-36 cdk: the SybylAtomTypeMatcher classpath (also in the atomtype module) it works again
20:18 edrin joined #cdk
20:36 CIA-36 cdk: egonw * r12853 /cdk-eclipse/trunk/src/main/net/sf/cdk/t​ools/eclipse/EclipseProjectCreator.java: Added missing Bundle-ClassPath (sorry Ola\!)
21:38 thomasku joined #cdk
21:48 CIA-36 cdk: egonw * r12854 /cdk/branches/cdk-1.2.x/src/main/org/open​science/cdk/reaction/ReactionChain.java: HashmapChain by key control returning reaction in method getReaction_int
21:49 CIA-36 cdk: egonw * r12855 /cdk/branches/cdk-1.2.x/src/ (49 files in 5 dirs):
21:49 CIA-36 cdk: Added testMethod value for Junit4
21:49 CIA-36 cdk: Author: miguelrojasch <miguelrojasch@eb4e18e3-b210-0410-a6ab-dec725e4b171>
21:49 CIA-36 cdk: Committer: Egon Willighagen <egon.willighagen@gmail.com>
21:49 CIA-36 cdk: egonw * r12856 /cdk/branches/cdk-1.2.x/src/ (5 files in 3 dirs):
21:49 CIA-36 cdk: Set new methods to read new schemes of the reactions dictionary
21:49 CIA-36 cdk: Author: miguelrojasch <miguelrojasch@eb4e18e3-b210-0410-a6ab-dec725e4b171>
21:49 CIA-36 cdk: Committer: Egon Willighagen <egon.willighagen@gmail.com>
21:49 CIA-36 cdk: egonw * r12857 /cdk/branches/cdk-1.2.x/src/test/org/op​enscience/cdk/qsar/descriptors/atomic/P​iElectronegativityDescriptorTest.java:
21:49 CIA-36 cdk: Invalid smiles string
21:49 CIA-36 cdk: Author: miguelrojasch <miguelrojasch@eb4e18e3-b210-0410-a6ab-dec725e4b171>
21:49 CIA-36 cdk: Committer: Egon Willighagen <egon.willighagen@gmail.com>
21:50 CIA-36 cdk: egonw * r12858 /cdk/branches/cdk-1.2.x/src/ (95 files in 10 dirs):
21:50 CIA-36 cdk: Added dictionary which reads from a reaction-process.owl the mechanism for specific type reaction.
21:50 CIA-36 cdk: Author: miguelrojasch <miguelrojasch@eb4e18e3-b210-0410-a6ab-dec725e4b171>
21:50 CIA-36 cdk: Committer: Egon Willighagen <egon.willighagen@gmail.com>
21:51 CIA-36 cdk: egonw * r12859 /cdk/branches/cdk-1.2.x/src/test/org/opensc​ience/cdk/modulesuites/MreactionTests.java:
21:51 CIA-36 cdk: Added all existent reaction tests in MreactionTest
21:51 CIA-36 cdk: Author: miguelrojasch <miguelrojasch@eb4e18e3-b210-0410-a6ab-dec725e4b171>
21:51 CIA-36 cdk: Committer: Egon Willighagen <egon.willighagen@gmail.com>
21:51 CIA-36 cdk: egonw * r12860 /cdk/branches/cdk-1.2.x/src​/test/org/openscience/cdk/ (4 files in 3 dirs): Fixed for NewCDKTestCase -> CDKTestCase renaming
21:51 CIA-36 cdk: egonw * r12861 /cdk/branches/cdk-1.2.x/src/main/org/opensci​ence/cdk/atomtype/SybylAtomTypeMatcher.java: Fixed constructor: wrong file format; add getClassLoader()
21:51 CIA-36 cdk: egonw * r12862 /cdk/branches/cdk-1.2.x/src​/test/org/openscience/cdk/ (4 files in 3 dirs): Fixed a few test class instantiation problems
21:53 CIA-36 cdk: egonw * r12863 /cdk/branches/miguelrojasch-reactions/: Applied to the CDK 1.2.x branch.

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