Camelia, the Perl 6 bug

IRC log for #cdk, 2008-10-29

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All times shown according to UTC.

Time Nick Message
05:52 thomas_ku joined #cdk
05:55 thomas_ku moin
05:55 zarah hi thomas_ku
07:44 carsten joined #cdk
08:08 egonw joined #cdk
08:10 Julio joined #cdk
08:11 Julio left #cdk
08:44 egonw_ joined #cdk
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09:25 shk3 joined #cdk
09:25 CIA-36 cdk: egonw * r12864 /cdk-eclipse/trunk/src/main/net/sf/cdk/t​ools/eclipse/EclipseProjectCreator.java: Fixed build.properties
09:55 CIA-36 cdk: miguelrojasch * r12865 /cdk/branches/miguelrojasch-ReactionOntology/: Removed branch. It was the absolete branch of the miguelrojasch-reaction project which it is already merged to cdk1.2
10:20 egonw_ joined #cdk
10:44 jpansanel moin
10:44 zarah hi jpansanel
10:49 gilleain joined #cdk
10:52 olass joined #cdk
10:52 olass moin
10:52 zarah hi olass
10:54 olass http://bioclipse.blogspot.com/2008/10​/bioclipse-200a20081028-released.html
10:54 zarah olass's link is also http://tinyurl.com/5mqoqm
10:54 CIA-36 cdk: egonw * r12866 /cdk/tags/cdk-1.1.1/: Tagged CDK 1.1.1, which just happens to be what has been released with Bioclipse 2.0.0.A20081028
10:54 egonw_ now I only have to make the 1.1.1 release :)
10:54 olass feel the pressure
10:55 egonw_ oh, crap
10:55 egonw_ wrong branch
10:55 olass what is the tags name?
10:55 olass 1.1.1?
10:55 olass CDK 1.1.1?
10:55 egonw_ cdk-1.1.0
10:55 CIA-36 cdk: egonw * r12867 /cdk/tags/cdk-1.1.1/: Removed. Copied from trunk not cdk1.2.x :(
10:56 egonw_ cdk-1.1.1
10:56 olass ok
10:57 CIA-36 cdk: egonw * r12868 /cdk/tags/cdk-1.1.1/: Tagged CDK 1.1.1, which just happens to be what has been released with Bioclipse 2.0.0.A20081028
11:12 egonw_ lunch
12:01 olass left #cdk
12:11 shk3 joined #cdk
12:16 egonw joined #cdk
12:27 CIA-36 cdk: egonw * r12869 /cdk/tags/cdk-1.1.1/build.props: Fixed version number
12:27 shk3 joined #cdk
12:39 egonw joined #cdk
13:05 CIA-36 cdk: goglepox * r12870 /cdk/branches/goglepox-jchempaint/src/main​/org/openscience/cdk/renderer/generators/ (BasicBondGenerator.java ExtraBondGenerator.java): Moved aromaticity code to ExtraBondGenerator
13:16 gilleain joined #cdk
13:42 CIA-36 cdk: goglepox * r12871 /cdk/branches/goglepox-jchempaint/sr​c/main/org/openscience/cdk/renderer/​generators/ExtraBondGenerator.java: Added color to the aromaticity ring that is currently rendered as a oval not a ring
13:44 CIA-36 cdk: goglepox * r12872 /cdk/branches/goglepox-jchempaint/s​rc/main/org/openscience/cdk/rendere​r/elements/WedgeLineElement.java: returns (x,y) or (x1,y1) first depending direction
14:01 egonw joined #cdk
15:28 CIA-36 cdk: egonw * r12873 /cdk-xws/ (. branches/ tags/ trunk/): Added place to store source code for XWS webservices for the CDK
15:35 CIA-36 cdk: egonw * r12874 /cdk-xws/trunk/README: Added basic README
15:51 carsten joined #cdk
16:11 CIA-36 cdk: egonw * r12875 /cdk-xws/trunk/xws-cdk-services/ (21 files in 13 dirs): Architecture for XMPP/IO-DATA-based webserservices
16:42 CIA-36 cdk: gilleain * r12876 /cdk/branches/gilleain-jchempaint/sr​c/main/org/openscience/cdk/renderer/ (28 files in 4 dirs):
16:42 CIA-36 cdk: - Completely removed the 'Tree' stuff.
16:42 CIA-36 cdk: - Partially merged the object models.
16:42 CIA-36 cdk: - Implemented a simple distance search Visitor.
16:43 CIA-36 cdk: gilleain * r12877 /cdk/branches/gilleain-jchempaint/sr​c/test/org/openscience/cdk/renderer/ (MiniJCPPanel.java SymbolTreeTest.java): - Forgot the test stuff.
16:45 shk3 hm, nightly complains about model builder stuff in cdk 1.2
16:46 shk3 I didn't commit in there for quite a while.
16:46 shk3 and I don't really understand what this is about.
16:46 shk3 anybody an idea?
16:49 egonw what is is complaining about?
16:49 egonw you mean this test:
16:49 egonw Testcase: testCoverage(org.openscience.cdk.cov​erage.Builder3dCoverageTest):FAILED
16:49 egonw The builder3d module is not fully tested! Missing number of method tests: 5 in number of classes: 1; Missing test classes: 4
16:49 egonw junit.framework.AssertionFailedError: The builder3d module is not fully tested! Missing number of method tests: 5 in number of classes: 1; Missing test classes: 4
16:49 egonw ?
16:50 shk3 well, got an email from nightly
16:51 shk3 lots of
16:51 egonw one the 27th?
16:51 egonw lots of?
16:51 shk3 yesterday
16:51 shk3 well, 4
16:52 egonw that's been fixed
16:53 shk3 ah
16:53 shk3 good to know
16:53 egonw if you check which class it actually is failing in, you see that it is not a builder3d class
16:53 shk3 yes
16:53 shk3 but still worried me ;-)
16:53 egonw but merely a class not found problem, so a missing dep of test-qsar to builder3d
16:54 egonw did you write up a wiki page on how to regenerate the dbs for builder3d?
16:54 egonw oh, need to go now
19:30 carsten joined #cdk
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20:53 CIA-36 cdk: miguelrojasch * r12878 /cdk/branches/cdk-1.2.x/src/test/org​/openscience/cdk/graph/invariant/Con​jugatedPiSystemsDetectorTest.java: Bug solved. Test was failing because the charge was not pointed to the correct atom. Now, the initiation of the molecule is substituted from SMILES to the IMolecule object.
20:57 CIA-36 cdk: miguelrojasch * r12879 /cdk/branches/cdk-1.2.x/src/test/org/openscience​/cdk/tools/StructureResonanceGeneratorTest.java: removed unnecessary print
20:57 egonw miguelrojasch++
21:00 edrin joined #cdk
21:00 egonw hi edrin
21:43 CIA-36 cdk: miguelrojasch * r12880 /cdk/branches/cdk-1.2.x/src/ (2 files in 2 dirs): Closed bug: 2014515. Now the structureResonanceGenerator extracts correctly the resonance according if you are looking at the symmetry of the molecule.
21:52 CIA-36 cdk: miguelrojasch * r12881 /cdk/branches/cdk-1.2.x/src/test/org/openscien​ce/cdk/atomtype/ResonanceStructuresTest.java: found mistake creating the IMolecule object.

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