Camelia, the Perl 6 bug

IRC log for #cdk, 2008-11-02

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All times shown according to UTC.

Time Nick Message
03:12 CIA-36 cdk: djiao * r12914 /cdk/trunk/src/test/org/openscience/cdk/smiles/sm​arts/parser/visitor/SmartsQueryVisitorTest.java: Added copyright info
06:17 jbrefort joined #cdk
08:16 CIA-36 cdk: miguelrojasch * r12915 /cdk/branches/cdk-1.2.x/src/main/​org/openscience/cdk/Element.java: atomicNumber set as default (Integer) CDKConstants.UNSET
08:16 rojasm joined #cdk
09:19 bag joined #cdk
09:42 egonw joined #cdk
09:43 egonw moin
09:43 zarah hi egonw
09:54 egonw hi rojasm
10:02 edrin joined #cdk
10:36 CIA-36 cdk: eoc21 * r12916 /cdk/branches/eoc21-jj1802589​/doc/dict/xsl/owl2xhtml.xsl: Line 133 'sent' not 'send'
10:37 CIA-36 cdk: eoc21 * r12917 /cdk/branches/eoc21-jj1802589​/doc/dict/xsl/pmathmlcss.xsl:
10:37 CIA-36 cdk: Line 34: 'teh' -> 'the'
10:37 CIA-36 cdk: Line 105: 'aand' -> 'and'
10:37 CIA-36 cdk: Line 111: 'aligngroups' -> 'align group'
10:37 CIA-36 cdk: Line 392: 'fionts' -> 'fonts'
10:49 CIA-36 cdk: eoc21 * r12918 /cdk/branches/eoc21-jj1802589/doc/refs/ (cdknews.bibx cheminf.bibx): Line 6: 'preferable' 'preferably'
10:50 CIA-36 cdk: eoc21 * r12919 /cdk/branches/eoc21-jj1802589/doc/refs/README: Lines 3 & 4: 'sanatize' -> 'sanitize'
10:54 carsten joined #cdk
11:43 CIA-36 cdk: miguelrojasch * r12920 /cdk/branches/cdk-1.2.x/src/ (4 files in 4 dirs): Set the period and group objects as Double
11:48 CIA-36 cdk: miguelrojasch * r12921 /cdk/branches/cdk-1.2.x/src/ (4 files in 4 dirs):
11:48 CIA-36 cdk: Added in chemicalElements.xml more schemes(radioVdw,radioCov,PaulingElect).
11:48 CIA-36 cdk: Incorporate into the reader the functions to read the new schemes.
11:48 CIA-36 cdk: New testclass for ElementPTFactory.
11:51 CIA-36 cdk: miguelrojasch * r12922 /cdk/branches/cdk-1.2.x/src/test/org/open​science/cdk/tools/PeriodicTableTest.java: Updated. Group is now a Double
11:53 CIA-36 cdk: miguelrojasch * r12923 /cdk/branches/cdk-1.2.x/src/main/org/ope​nscience/cdk/PeriodicTableElement.java: The configuration process of a PeriodicTableElement is now carried out from ElementTPFactory
11:54 bag_ joined #cdk
12:24 CIA-36 cdk: miguelrojasch * r12924 /cdk/branches/cdk-1.2.x/src/main/org/open​science/cdk/config/ElementPTFactory.java: Correction of the assigned testclass
12:34 CIA-36 cdk: miguelrojasch * r12925 /cdk/branches/cdk-1.2.x/src/ (2 files in 2 dirs): Added test to do happy the Junit report
13:19 CIA-36 cdk: miguelrojasch * r12926 /cdk/branches/cdk-1.2.x/src/test/org/opensc​ience/cdk/config/ElementPTFactoryTest.java: Added test to ElementalPTFactory
13:41 CIA-36 cdk: eoc21 * r12927 /cdk/branches/eoc21-jj1802589/doc/RFC/19.xml: Line 54: 'entity' not 'entitiy'
13:42 CIA-36 cdk: eoc21 * r12928 /cdk/branches/eoc21-jj1802589/doc/RFC/18.xml: Lines: 41, 60 & 101 -> 'mailing' not 'mailling'
13:43 CIA-36 cdk: eoc21 * r12929 /cdk/branches/eoc21-jj1802589/doc/RFC/17.xml: Line 45: 'useful' not 'usefull'
13:43 CIA-36 cdk: eoc21 * r12930 /cdk/branches/eoc21-jj1802589/doc/RFC/2.xml: Definite not 'definate'
13:44 CIA-36 cdk: eoc21 * r12931 /cdk/branches/eoc21-jj1802589/doc/RFC/21.xml: Line 26: subclass not 'sublass'
13:45 CIA-36 cdk: eoc21 * r12932 /cdk/branches/eoc21-jj1802589/doc/RFC/22.xml:
13:45 CIA-36 cdk: Line 41: 'commendium' not 'comendium'
13:45 CIA-36 cdk: Line 43: 'ion' not 'ione'
13:46 CIA-36 cdk: eoc21 * r12933 /cdk/branches/eoc21-jj1802589/doc/RFC/25.xml: Line 38: 'accessible' not 'accesible'
13:46 CIA-36 cdk: eoc21 * r12934 /cdk/branches/eoc21-jj1802589/doc/RFC/4.xml: Line 34: 'whether' not 'wether'
13:47 CIA-36 cdk: eoc21 * r12935 /cdk/branches/eoc21-jj1802589/doc/RFC/12.xml:
13:47 CIA-36 cdk: Line 24: 'An API', 'renders' not 'renderers'
13:47 CIA-36 cdk: Line 26: 'Displayed' not 'displayes'
13:47 CIA-36 cdk: Line 29: IBID
13:49 CIA-36 cdk: eoc21 * r12936 /cdk/branches/eoc21-jj1802589/doc/RFC/1.xml:
13:49 CIA-36 cdk: Line 28: 'a documentation tool'
13:49 CIA-36 cdk: Line 29: 'mailing' not 'mailling'
13:49 CIA-36 cdk: Line 38 & 84: IBID
13:49 CIA-36 cdk: Line 50: 'intent' not 'intend'
13:49 CIA-36 cdk: Line 91: 'smoothe' -> 'smooth'
14:01 CIA-36 cdk: eoc21 * r12937 /cdk/branches/eoc21-jj1802589/d​oc/user-guide/coreclasses.xml:
14:01 CIA-36 cdk: Line 22: 'Successively' not 'successivly'
14:01 CIA-36 cdk: Line 61: 'probably'not 'probly'
14:01 CIA-36 cdk: Line 61: 'expect' not 'exspect'
14:01 CIA-36 cdk: Line 80: 'program' not 'programm'
14:12 CIA-36 cdk: eoc21 * r12938 /cdk/branches/eoc21-jj1802589/d​oc/user-guide/extraclasses.xml:
14:12 CIA-36 cdk: Line 39: 'Prediction' not 'prediciton'
14:12 CIA-36 cdk: Line 108: 'orbital'
14:12 CIA-36 cdk: Line 137: IBID
14:13 CIA-36 cdk: eoc21 * r12939 /cdk/branches/eoc21-jj180258​9/doc/user-guide/intro.xml:
14:13 CIA-36 cdk: Line 15: 'perceived' not 'percepted'
14:13 CIA-36 cdk: Line 28: 'molecules' not 'molcecules'
14:14 CIA-36 cdk: eoc21 * r12940 /cdk/branches/eoc21-jj1802589/​doc/user-guide/ioclasses.xml:
14:14 CIA-36 cdk: Line 15: 'following' not 'folowing'
14:15 CIA-36 cdk: Line 56: 'customized' not 'cusomized'
14:15 CIA-36 cdk: Line 59: 'customization' not 'costumization'
14:18 CIA-36 cdk: eoc21 * r12941 /cdk/branches/eoc21-jj1802​589/doc/website/build.xml: Line 18: removed 'does'
14:31 CIA-36 cdk: eoc21 * r12942 /cdk/branches/eoc21-jj1802589/​doc/xml-dtd-4.2/soextblx.dtd: Line 57: omission not 'ommission'
14:40 CIA-36 cdk: eoc21 * r12943 /cdk/branches/eoc21-jj1802589/doc/CHANGELOG: (log message trimmed)
14:40 CIA-36 cdk: Line 37: 'outputting' not 'outputing'
14:40 CIA-36 cdk: Line 41: 'matrix' not 'matrixi'
14:40 CIA-36 cdk: Line 114: 'constructor' not 'contructor'
14:40 CIA-36 cdk: Line 256: 'converter' not 'convertor'
14:40 CIA-36 cdk: Line 289: 'explicitly' not 'explicitely'
14:40 CIA-36 cdk: Line 316: 'whether' not 'wether'
15:11 CIA-36 cdk: eoc21 * r12944 /cdk/branches/eoc21-jj1802589​/src/test/data/abinit/t54.in: Line 51: 'explicitly' not 'explicitely'
15:15 CIA-36 cdk: eoc21 * r12945 /cdk/branches/eoc21-jj1802589/src/t​est/data/asn/pubchem/sid577309.xml: Line 32: 'comparison' not 'comparision'
15:26 CIA-36 cdk: eoc21 * r12946 /cdk/branches/eoc21-jj1802589/src/test/​data/ctx/methanol_with_descriptors.ctx: Line 424: cation not 'kation'
16:06 egonw joined #cdk
16:46 edr1n joined #cdk
16:48 CIA-36 cdk: eoc21 * r12947 /cdk/branches/eoc21-jj1802589/sr​c/test/data/pcore/invalid1.xml: Line 5: 'global', 'pharmacophore'
16:49 CIA-36 cdk: eoc21 * r12948 /cdk/branches/eoc21-jj1802589/​src/test/data/pcore/pcore.xml: Line 5: 'global', 'pharmacophore'
17:00 CIA-36 cdk: eoc21 * r12949 /cdk/branches/eoc21-jj1802589/src/test/org/opens​cience/cdk/atomtype/CDKAtomTypeMatcherTest.java: Line 2296: 'including'
17:03 CIA-36 cdk: eoc21 * r12950 /cdk/branches/eoc21-jj1802589/src/test/org/opens​cience/cdk/atomtype/MM2AtomTypeMatcherTest.java: Line 140: Rephrased
17:04 CIA-36 cdk: eoc21 * r12951 /cdk/branches/eoc21-jj1802589/src/test/org/opensci​ence/cdk/atomtype/MMFF94AtomTypeMatcherTest.java: Line: 388 - rephrased.
17:09 CIA-36 cdk: eoc21 * r12952 /cdk/branches/eoc21-jj1802589/src/test/org/opens​cience/cdk/atomtype/ReactionStructuresTest.java: Replace 'his' with 'its' a molecule or fragment is not masculine (in English).
17:12 CIA-36 cdk: eoc21 * r12953 /cdk/branches/eoc21-jj1802589/src/test/org/opensc​ience/cdk/atomtype/ResonanceStructuresTest.java: Replace 'his' with 'its', again a molecule or fragment is not masculine.
17:20 CIA-36 cdk: eoc21 * r12954 /cdk/branches/eoc21-jj1802589/src/test/org/open​science/cdk/coverage/AtomtypeCoverageTest.java: Line 28: removed 'uses'
17:20 CIA-36 cdk: gilleain * r12955 /cdk/branches/gilleain-jchempaint/src/ (15 files in 5 dirs):
17:20 CIA-36 cdk: - Ported more of Arvid's new generator stuff over.
17:20 CIA-36 cdk: - Fixes to make things draw again.
17:20 CIA-36 cdk: eoc21 * r12956 /cdk/branches/eoc21-jj1802589/src/test/org/open​science/cdk/coverage/ChargesCoverageTest.java: Line 28: removed 'uses'
17:21 CIA-36 cdk: eoc21 * r12957 /cdk/branches/eoc21-jj1802589/src/test/org/op​enscience/cdk/coverage/CoreCoverageTest.java: Line 28: removed 'uses'
17:23 CIA-36 cdk: eoc21 * r12958 /cdk/branches/eoc21-jj1802589/src/test/org/o​penscience/cdk/coverage/IoCoverageTest.java: Line 28: remove 'uses'
17:24 CIA-36 cdk: eoc21 * r12959 /cdk/branches/eoc21-jj1802589/src/test/org/ope​nscience/cdk/coverage/IonpotCoverageTest.java: Line 28: remove 'uses'
17:27 CIA-36 cdk: eoc21 * r12960 /cdk/branches/eoc21-jj1802589/src/test/org/ope​nscience/cdk/coverage/PcoreCoverageTest.java: Line 28: removed 'uses'
17:28 CIA-36 cdk: eoc21 * r12961 /cdk/branches/eoc21-jj1802589/src/test/org/opens​cience/cdk/coverage/QsaratomicCoverageTest.java: Line 28: removed 'uses'
17:28 CIA-36 cdk: eoc21 * r12962 /cdk/branches/eoc21-jj1802589/src/test/org/open​science/cdk/coverage/QsarbondCoverageTest.java: Line 28: removed 'uses'
17:29 CIA-36 cdk: eoc21 * r12963 /cdk/branches/eoc21-jj1802589/src/test/org/op​enscience/cdk/coverage/QsarCoverageTest.java: Line 28: removed 'uses'
17:29 CIA-36 cdk: eoc21 * r12964 /cdk/branches/eoc21-jj1802589/src/test/org/opens​cience/cdk/coverage/QsarionpotCoverageTest.java: Line 28: removed 'uses'
17:30 CIA-36 cdk: eoc21 * r12965 /cdk/branches/eoc21-jj1802589/src/test/org/opensci​ence/cdk/coverage/QsarmolecularCoverageTest.java: Line 28: removed 'uses'
17:31 CIA-36 cdk: eoc21 * r12966 /cdk/branches/eoc21-jj1802589/src/test/org/open​science/cdk/coverage/ReactionCoverageTest.java: Line 28: removed 'uses'
17:32 CIA-36 cdk: eoc21 * r12967 /cdk/branches/eoc21-jj1802589/src/test/org/open​science/cdk/coverage/StandardCoverageTest.java: Line 28: removed 'uses'
17:39 CIA-36 cdk: eoc21 * r12968 /cdk/branches/eoc21-jj1802589/src/t​est/org/openscience/cdk/fingerprint​/GraphOnlyFingerprinterTest.java: Line 76: comment rephrased
17:56 CIA-36 cdk: eoc21 * r12969 /cdk/branches/eoc21-jj1802589/src/test/org/open​science/cdk/graph/ConnectivityCheckerTest.java: Line 98: 'consistency'
18:01 CIA-36 cdk: eoc21 * r12970 /cdk/branches/eoc21-jj1802589/src/test/org/op​enscience/cdk/io/cml/CML23FragmentsTest.java: Line 52: removed 'the'
18:09 CIA-36 cdk: eoc21 * r12971 /cdk/branches/eoc21-jj1802589/src/test/org/o​penscience/cdk/io/cml/CMLFragmentsTest.java: Line 46: removed 'the'
18:14 CIA-36 cdk: eoc21 * r12972 /cdk/branches/eoc21-jj1802589/src/test/org/o​penscience/cdk/io/cml/CMLRoundTripTest.java:
18:14 CIA-36 cdk: Line 70: removed 'the'
18:14 CIA-36 cdk: Line 502 'aromaticity'
18:15 CIA-36 cdk: eoc21 * r12973 /cdk/branches/eoc21-jj1802589/src/test/org/​openscience/cdk/io/cml/JChemPaintTest.java: Line 45: removed 'the'
18:16 CIA-36 cdk: eoc21 * r12974 /cdk/branches/eoc21-jj1802589/src/test/o​rg/openscience/cdk/io/cml/JmolTest.java: Line 48: removed 'the'
18:17 CIA-36 cdk: eoc21 * r12975 /cdk/branches/eoc21-jj1802589/src/test/org/opens​cience/cdk/io/cml/Jumbo46CMLFragmentsTest.java: Line 45: removed 'the'
18:18 CIA-36 cdk: eoc21 * r12976 /cdk/branches/eoc21-jj1802589/src/test/or​g/openscience/cdk/io/cml/JumboTest.java: Line 45: removed 'the'
18:20 CIA-36 cdk: eoc21 * r12977 /cdk/branches/eoc21-jj1802589/src/test/org/op​enscience/cdk/layout/HydrogenPlacerTest.java: Line 120: removed 'h'
18:23 CIA-36 cdk: eoc21 * r12978 /cdk/branches/eoc21-jj1802589/src/test/org/o​penscience/cdk/libio/md/MDMoleculeTest.java: Lines 69 & 246: Spacing
18:26 CIA-36 cdk: eoc21 * r12979 /cdk/branches/eoc21-jj1802589/src/​test/org/openscience/cdk/modeling/​builder3d/ModelBuilder3dTest.java: Line 182: 'builder'
18:31 CIA-36 cdk: eoc21 * r12980 /cdk/branches/eoc21-jj1802589/src/test/org/ope​nscience/cdk/modulesuites/MnonotifyTests.java: Line 68: 'M' added
19:23 CIA-36 cdk: rajarshi * r12981 /cdk/branches/cdk-1.2.x/tools/nightly.py: Added code to run copyright summary
20:10 bag joined #cdk
20:14 CIA-36 cdk: rajarshi * r12982 /cdk/branches/cdk-1.2.x/tools/nightly.py: Fixed a minor bug when generating copyright summary
20:46 CIA-36 cdk: eoc21 * r12983 /cdk/branches/eoc21-jj1802589/src/test/org/ope​nscience/cdk/modulesuites/MnonotifyTests.java: Changed javadoc to Egon's suggestion 'TestSuite that runs the tests from the nonotify module.'
21:23 edrin joined #cdk
21:29 egonw hi edrin
21:31 edrin hi egonw
22:08 egonw edrin: have you ever looked at OWL-S?
22:10 edrin egonw: what is this?
22:10 egonw an OWL application to describe (web) services
22:11 egonw http://www.w3.org/Submission/OWL-S/
22:11 zarah egonw's link is also http://tinyurl.com/6qnbal
22:23 edrin egonw: do you think this is applicable on our xmpp web services?
22:24 egonw can't say yet...
22:24 egonw at some point I wish we could do:
22:24 edrin hm
22:24 egonw egonw@ws1: is there anyone who implementes ServiceProfileX?
22:24 edrin do you see a certain advantage of this?
22:24 egonw cdk@ws1: yes, I do ... pick me, pick me!
22:24 edrin ah
22:25 egonw and ten/twelve more components reply all over the internet
22:25 egonw did I say ten? ten *thousand*
22:25 egonw I just have to share this:
22:25 egonw http://pythonide.blogspot.com/2008/10/ho​w-to-make-money-with-free-software.html
22:25 edrin in theory pub-sub might be used for such behavior, but that's not compatible to anything else yet i think
22:25 zarah egonw's link is also http://tinyurl.com/6ju9q3
23:12 edrin egonw: xws4j is registered
23:16 edrin egonw: still available?
23:16 egonw yes, saw your private msg
23:33 CIA-36 cdk: rajarshi * r12984 /cdk/branches/cdk-1.2.x/src/main/net/sf/cdk/t​ools/copyright/CheckCopyrightStatements.java: Updated code to skip files that are autogenerated by looking to see if the stribng 'do not edit' is present
23:47 edrin ok
23:47 * edrin going to bed
23:47 edrin good night

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