Camelia, the Perl 6 bug

IRC log for #cdk, 2008-11-20

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All times shown according to UTC.

Time Nick Message
08:32 egonw joined #cdk
08:59 jonalv joined #cdk
09:09 jbrefort joined #cdk
09:15 egonw https://apps.sourceforge.net/mediawiki/cd​k/index.php?title=JChemPaintWorkshop2008
09:37 jpansanel moin
09:37 zarah hi jpansanel
09:57 egonw hi jpansanel
09:58 jpansanel hi egonw
09:59 jpansanel I'm working hard on mychem
09:59 jpansanel It's now fully working with Open Babel v2.2.0
09:59 jpansanel I could fix many bugs
09:59 jpansanel and add some useful functions
09:59 egonw good to hear that
10:00 jpansanel I maintain two branches
10:00 shk3 joined #cdk
10:00 jpansanel mychem2 -> Open Babel v2.1.1
10:00 jpansanel mychem3 -> Open Babel v2.2.0
10:01 egonw I'd still love to see integration with Bioclipse
10:01 egonw you should talk to jonalv
10:01 jpansanel ok
10:02 jpansanel The next version of mychem will be very usable
10:57 CIA-37 cdk: gilleain * r13146 /jchempaint/trunk/src/main/​org/openscience/jchempaint/ (Main.java RenderPanel.java): Bridging commit (broken)
14:13 gilleain joined #cdk
15:05 CIA-37 cdk: egonw * r13147 /cdk/branches/goglepox-jchempaint/src​/main/org/openscience/cdk/controller/ (Controller2DHub.java Controller2DModuleMove.java): Applied patches from Arvid/Egon, 3472739958487ce5297ceeafd678fc3f626fbc46..HEAD from the Bioclipse2 repos
15:07 CIA-37 cdk: egonw * r13148 /cdk/branches/jchempaint-primary/: Nothing happened, so going to make goglepox-jchempaint the jchempaint-primary
15:08 CIA-37 cdk: egonw * r13149 /cdk/branches/ (goglepox-jchempaint/ jchempaint-primary/): Nothing happened (2): renaming goglepox-jchempaint to jchempaint-primary
15:13 CIA-37 cdk: egonw * r13150 /cdk/branches/jchempaint-primar​y/src/main/org/openscience/cdk/ (6 files in 3 dirs): Synchronized with Bioclipse version: diff 3d47759a77be0aba754b8fa28fb286427f00db66..HEAD from Bioclipse2 SVN
16:03 CIA-37 cdk: egonw * r13151 /cdk/branches/jchempaint-primary/src/​main/org/openscience/cdk/controller/ (Controller2DHub.java IChemModelRelay.java): Implemented addRing(IAtom atom, int size)
16:24 CIA-37 cdk: egonw * r13152 /cdk/branches/jchempaint-primary/src/​main/org/openscience/cdk/controller/ (Controller2DHub.java IChemModelRelay.java): Implemented addPhenyl(IAtom atom)
16:25 sneumann Hi, has anyone experience organising a webinar ? We're thinking about one for Mass Spectrometry, esp. XCMS
16:25 sneumann But that might also be cool for cdk / Bioclipse presentation
16:26 sneumann You could assemble a webinar from IRC / Screencast / Audiocast solutions,
16:26 sneumann but for general audience a one-stop solution would be cool.
16:30 shk3 I haven't even experience taking a webinar
16:30 sneumann ;-)
16:38 egonw no idea
16:38 egonw I've seen people using IRC
16:38 egonw and say:
16:38 egonw slide 7
16:38 egonw while typing what they want to say
16:38 egonw and the slides online as PDF
16:38 egonw and say: -> and type every now and then:
16:39 CIA-37 cdk: gilleain * r13153 /cdk/branches/jchempaint-primary/src​/main/org/openscience/cdk/renderer/ (29 files in 5 dirs): Merge.
16:39 sneumann Yup, that'd be great if we did it, we have IRC accounts, know slideshare etc.
16:39 sneumann I just thought anyone had experience with e.g. Adobe connect pro
16:39 sneumann without the adobe bit :-) BTW. that's what the eclipse peiple use for their webinars.
16:44 egonw no eclipse people here...
16:45 egonw flash is mentioned here...
16:45 egonw but no clue about tools to create such
16:46 sneumann No problem, only if someone already had experience.
16:52 CIA-37 cdk: shk3 * r13154 /jchempaint/trunk/ (7 files in 4 dirs): jcp compiles with jchempaint-primary branch
17:01 CIA-37 cdk: gilleain * r13155 /cdk/branches/jchempaint-primary/src/ (8 files in 3 dirs): Solved one problem, now have another.
17:15 CIA-37 cdk: gilleain * r13156 /cdk/branches/jchempaint-primary/src​/main/org/openscience/cdk/renderer/ (3 files in 3 dirs): Wasn't generating bonds...
17:34 CIA-37 cdk: shk3 * r13157 /jchempaint/trunk/src/main/​org/openscience/jchempaint/ (applet/JChemPaintApplet.java application/JChemPaint.java): made the applet an applet
17:44 egonw http://chem-bla-ics.blogspot.com/​2008/11/scripting-jchempaint.html
17:44 zarah egonw's link is also http://tinyurl.com/566wm4
17:44 CIA-37 cdk: gilleain * r13158 /cdk/branches/jchempaint-primary/src/ (2 files in 2 dirs): getCoorFromScreen implemented properly now.
17:49 CIA-37 cdk: shk3 * r13159 /jchempaint/trunk/src/main/​org/openscience/jchempaint/ (3 files in 3 dirs): more for the application
18:16 CIA-37 cdk: miguelrojasch * r13160 /cdk/trunk/src/ (2 files in 2 dirs): added method to calculate the Total Mass Number given a IMolecularFormula
18:24 CIA-37 cdk: miguelrojasch * r13161 /cdk/trunk/src/test/org/openscience/cdk/tools/ma​nipulator/MolecularFormulaManipulatorTest.java: Correction of the solution
18:43 CIA-37 cdk: miguelrojasch * r13162 /cdk/trunk/src/ (3 files in 3 dirs): The validation of the nitrogen rules must be based on the Total mass number and not on the round mass from the exact mass.
18:57 CIA-37 cdk: miguelrojasch * r13163 /cdk/branches/cdk-1.2.x/src/ (2 files in 2 dirs): added method to calculate the Total Mass Number given a IMolecularFormula
18:58 CIA-37 cdk: miguelrojasch * r13164 /cdk/branches/cdk-1.2.x/src/ (2 files in 2 dirs): The validation of the nitrogen rules must be based on the Total mass number and not on the round mass from the exact mass.
19:15 jbrefort joined #cdk
19:18 CIA-37 cdk: miguelrojasch * r13165 /cdk/trunk/src/ (4 files in 4 dirs): Revert to revision 13159. The commits ware intentioned to be send to cdk.1.2.x branch
20:20 gilleain joined #cdk
21:24 carsten joined #cdk
21:45 CIA-37 blueobelisk: pansanel * r255 /structures/trunk/src/acid_anhydrides/ (CMakeLists.txt index.xml): Fix an issue
22:15 edrin joined #cdk
23:05 CIA-37 cdk: gilleain * r13166 /cdk/branches/jchempaint-primary/src​/main/org/openscience/cdk/renderer/ (19 files in 5 dirs): Various cleanups.
23:19 CIA-37 cdk: gilleain * r13167 /cdk/branches/jchempaint-primary/src/main​/org/openscience/cdk/renderer/generators/ (4 files): Ugly fix to ensure that the immutable Elements get created centered on the origin (without transforming the chem object).

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