Camelia, the Perl 6 bug

IRC log for #cdk, 2008-11-29

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All times shown according to UTC.

Time Nick Message
05:15 cpyang joined #cdk
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07:11 slyrus__ joined #cdk
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10:37 CIA-16 joined #cdk
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13:18 egonw joined #cdk
13:26 egonw moin
13:26 zarah hi egonw
13:27 egonw ha zarah! good to see you back online!
16:03 CIA-16 cdk: egonw * r13376 /nightly/ (. trunk/): Setting up a project for Nightly
16:05 CIA-16 cdk: egonw * r13377 / (4 files in 2 dirs): Moved Nightly into a separate project
16:17 CIA-16 cdk: egonw * r13378 /cdk/branches/cdk-1.2.x/tools/ (nightly.config.sample nightly.py): Removed; these tools are now available from cdk/nightly/trunk
16:32 gilleain joined #cdk
16:49 CIA-16 cdk: egonw * r13379 /nightly/trunk/nightly.py: Synched with help in config file: check for None
16:49 edrin joined #cdk
16:57 CIA-16 cdk: miguelrojasch * r13380 /cdk/branches/cdk-1.2.x/src/main/org/open​science/cdk/formula/rules/RDBERule.java: Removed code which didn't take correctly the oxidation
16:58 slyrus_ egonw: thanks for the help the other day.
16:58 slyrus_ can you elaborate a bit on the relationship (if any) between BO and CDK?
17:58 egonw BO is a project that promotes Open Data, Open Science and Open Standards in chemistry (life sciences)
17:58 egonw the CDK is an open source project for chemoinformatics
17:58 egonw and member of the BO movement
18:18 slyrus_ egonw: ok, that's helpful.
18:18 slyrus_ egonw: thanks for bearing with me as I try to learn this stuff. I'm coming at it from a bioinformatics background, but have recently developed an interest in chemistry.
18:19 slyrus_ I'm probably lurking in the wrong place since I'm not actually using CDK, but rather trying to learn from the ideas and principles that are contained within it.
18:27 slyrus_ heh. you know it's a geeky project when some of the _build tools_ are written in R :)
18:29 egonw yes
18:30 egonw there are others here who are not core cdk developer
18:30 egonw so not worries about that
18:33 timvdm joined #cdk
18:36 slyrus_ oops. looks like I can't just ape the way CDK handles SMILES stereochemistry: logger.warn("Ignoring stereo information for double bond");
19:01 CIA-16 cdk: egonw * r13381 /cdk/branches/jchempaint-primary/src/main/org/op​enscience/cdk/renderer/RenderingParameters.java: Added missing @cdk.module annotation
19:53 CIA-16 cdk: egonw * r13382 /cdk/branches/jchempaint-primary/build.xml: Updated build order to solve compile fail due to changed dependencies
22:11 CIA-16 cdk: egonw * r13383 /cdk/branches/cdk-1.2.x/build.xml: Removed use of source parameter, by making use of ant-contrib's <if>
22:12 CIA-16 cdk: egonw * r13384 /cdk/branches/cdk-1.2.x/build.xml: Use ant-contrib's foreach, allowing code cleanup and making running in parallel a parameter to dist-all, instead of a separate target
22:21 CIA-16 cdk: egonw * r13385 /cdk/branches/cdk-1.2.x/build.xml: Cleaned up build order, for changed dependencies

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