Camelia, the Perl 6 bug

IRC log for #cdk, 2008-12-03

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All times shown according to UTC.

Time Nick Message
02:34 slyrus_ joined #cdk
05:45 jbrefort joined #cdk
05:52 slyrus_ anyone have a nice test set of molecules (well, their SMILES strings really) that contain loops that are/aren't aromatic?
06:23 Gpox joined #cdk
07:21 carsten joined #cdk
07:31 slyrus_ so... how would one represent a bond in an aromatic ring like benzene? 3 double bonds and 3 singles? 6 1.5 bonds?
08:03 egonw joined #cdk
08:51 jonalv joined #cdk
08:54 jonalv oh hai
08:54 zarah hi jonalv
08:54 jonalv uhm where is cdk trunk? :)
08:57 jonalv oh haivm
08:57 jonalv nvm
09:17 shk3 joined #cdk
10:15 jbrefort joined #cdk
10:17 jpansanel moin
10:17 zarah hi jpansanel
10:32 jonalv hi jpansanel
10:40 gilleain joined #cdk
10:53 CIA-16 cdk: goglepox * r13436 /cdk/branches/jchempaint-primary/src/main/o​rg/openscience/cdk/renderer/Renderer.java: Removed hardcoded margins
10:53 CIA-16 cdk: goglepox * r13437 /cdk/branches/jchempaint-primary/src​/main/org/openscience/cdk/renderer/g​enerators/HighlightGenerator.java: No need to loop through atom container to generate highlight
11:53 CIA-16 cdk: gilleain * r13438 /jchempaint/trunk/src/main/org/opens​cience/jchempaint/RenderPanel.java: Small fixes to render panel.
12:02 shk3 joined #cdk
12:33 timvdm joined #cdk
14:13 CIA-16 cdk: goglepox * r13439 /cdk/branches/jchempaint-primary/src/main/org/​openscience/cdk/controller/AddBondModule.java: Added methods for bond / atom check to make the logic clearer.
14:13 CIA-16 cdk: goglepox * r13440 /cdk/branches/jchempaint-primary/src/main/org/o​penscience/cdk/controller/DrawBondModule.java:
14:13 CIA-16 cdk: Module for drawing bonds when draging
14:13 CIA-16 cdk: also adds atoms when not near any other.
14:13 CIA-16 cdk: This leavs behind some uncoccected bonds!!
14:41 shk3 joined #cdk
14:41 CIA-16 cdk: shk3 * r13441 /jchempaint/trunk/src/main/​org/openscience/jchempaint/ (3 files in 3 dirs): the viewer applet now has showscrollbars parameter
14:42 gilleain did that work then, shk3?
14:43 shk3 yes
14:43 shk3 I just need to pass the width and height parameters down from the applet class to the renderpanel
14:43 gilleain ah, ok.
14:44 shk3 i tried to get them in jcpviewerpanel with getwidth/height,
14:44 shk3 but that doesn't work
14:44 shk3 probably because things are not yet layed out at that point
14:44 gilleain ah, that old problem, yes.
14:46 gilleain hmmmm.
14:46 gilleain Class<IControllerModule>
14:47 gilleain nono, wait
14:47 gilleain private HashMap<String, Class<? extends IControllerModule>> moduleMap;
14:47 gilleain yes, that.
15:12 shk3 how is svg export now done?
15:12 shk3 ie what replaces the svgwriter?
15:13 gilleain it isnt / nothing
15:13 gilleain egon asked about that, too
15:13 gilleain he suggested batik
15:13 gilleain which has an svg graphics class
15:14 shk3 do we have a code example?
15:14 gilleain for what, batik?
15:14 gilleain I think you do this :
15:14 gilleain paint(new SVGGraphics())
15:14 gilleain basically
15:15 gilleain (instead of paint(Graphics g);
15:31 timvdm joined #cdk
15:47 carsten joined #cdk
15:48 egonw gilleain: yes
16:16 Conrad joined #cdk
16:17 CIA-16 cdk: shk3 * r13442 /jchempaint/trunk/src/main/​org/openscience/jchempaint/ (4 files in 3 dirs): copy/paste works
16:24 CIA-16 cdk: shk3 * r13443 /jchempaint/trunk/src/main/org/openscienc​e/jchempaint/action/CopyPasteAction.java: copy/paste works
16:26 CIA-16 cdk: egonw * r13444 /cdk/branches/jchempaint-primary/src/​main/org/openscience/cdk/controller/ (ControllerHub.java IChemModelRelay.java): Added missing removeBond(IBond)
16:37 CIA-16 cdk: egonw * r13445 /cdk/branches/jchempaint-primary/src/​main/org/openscience/cdk/controller/ (ControllerHub.java IChemModelRelay.java): Added experimental concept of phantoms, for temporary atoms and bonds which might be drawn
16:51 CIA-16 cdk: egonw * r13446 /cdk/branches/jchempaint-primary/src/​main/org/openscience/cdk/controller/ (ControllerHub.java IChemModelRelay.java): Made getChemMOdel() symmetric
17:24 CIA-16 cdk: gilleain * r13447 /cdk/branches/jchempaint-primar​y/src/main/org/openscience/cdk/ (8 files in 2 dirs): Adding single atoms to the blank canvas wasn't working properly (only a corner case! :)
18:00 gilleain joined #cdk
18:09 slyrus_ joined #cdk
18:22 timvdm joined #cdk
19:15 CIA-16 cdk: gilleain * r13448 / (37 files in 10 dirs):
19:15 CIA-16 cdk: - Made an interface for selections (ISelection).
19:15 CIA-16 cdk: - Changed Renderer2DModel to RendererModel (!!).
19:15 CIA-16 cdk: - Created a LogicalSelection class.
19:18 egonw joined #cdk
19:28 CIA-16 cdk: gilleain * r13449 /cdk/branches/jchempaint-primar​y/src/main/org/openscience/cdk/ (2 files in 2 dirs):
19:28 CIA-16 cdk: - Changed default initial bond length to 1.4 (could be added (back) to RenderModel).
19:28 CIA-16 cdk: - Fixed selection generator bug.
19:41 CIA-16 cdk: gilleain * r13450 /cdk/branches/jchempaint-primary/src/main/org/​openscience/cdk/controller/RemoveModule.java: Can now remove bonds as well as atoms.
19:43 egonw joined #cdk
19:55 CIA-16 cdk: gilleain * r13451 /cdk/branches/jchempaint-primary/src/main/org/​openscience/cdk/controller/AddBondModule.java: Was not adding a bond to an empty canvas (another minor corner case...)
20:18 CIA-16 cdk: gilleain * r13452 /cdk/branches/jchempaint-primary/src​/main/org/openscience/cdk/renderer/g​enerators/SelectionGenerator.java: Fix to generating the selection feedback.

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