Camelia, the Perl 6 bug

IRC log for #cdk, 2008-12-16

| Channels | #cdk index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
02:43 slyrus_ joined #cdk
06:09 jbrefort joined #cdk
06:16 carsten joined #cdk
08:46 egonw joined #cdk
09:11 jonalv joined #cdk
09:18 shk3 joined #cdk
10:21 Julio joined #cdk
10:21 gilleain joined #cdk
10:39 CIA-60 cdk: shk3 * r13590 /cdk/branches/jchempaint-primary/src/main/org/ope​nscience/cdk/tools/LonePairElectronChecker.java: renamed method
11:22 Julio joined #cdk
11:31 CIA-60 cdk: egonw * r13591 /cdk/branches/cdk-1.2.x/src​/test/org/openscience/cdk/ (18 files in 3 dirs): A few more factored out IChemObject test classes, filling the test-interfaces module to ensure that all these tests do not apply to a particular interface implementation (as many did/do); see other recent commits too
11:31 CIA-60 cdk: egonw * r13592 /cdk/branches/cdk-1.2.x/src/test​/org/openscience/cdk/interfaces/ (5 files): Put the class in the test-interfaces module, to make them independent of interface implementations; Fixed JavaDoc to refer to interfaces, not implementations
14:36 carsten joined #cdk
15:42 CIA-60 cdk: egonw * r13593 /cdk/branches/cdk-1.2.x/src​/test/org/openscience/cdk/ (2 files in 2 dirs): Removed duplicate of NoNotificationChemObjectBuilderTest
15:45 CIA-60 cdk: egonw * r13594 /cdk/branches/cdk-1.2.x/src/ (91 files in 7 dirs): Last batch of refactorings to remove dependencies of test-nonotify and test-datadebug on test-data
15:45 CIA-60 cdk: egonw * r13595 /cdk/branches/cdk-1.2.x/src​/test/org/openscience/cdk/ (9 files): Use the corresponding IChemObject test, which were copied from these files
16:20 CIA-60 cdk: egonw * r13596 /cdk/branches/cdk-1.2.x/src​/test/org/openscience/cdk/ (VariousTests.java smiles/SmilesParserTest.java): Moved unit test to SmilesParserTest as it tests the SmilesParser
16:20 CIA-60 cdk: egonw * r13597 /cdk/branches/cdk-1.2.x/src​/test/org/openscience/cdk/ (VariousTests.java modulesuites/MextraTests.java): Removed empty test class
16:20 CIA-60 cdk: egonw * r13598 /cdk/branches/cdk-1.2.x/src/main/o​rg/openscience/cdk/tools/manipulat​or/AtomContainerManipulator.java: Added helper method to calculate bond order sums
16:21 CIA-60 cdk: egonw * r13599 /cdk/branches/cdk-1.2.x/src/main/org​/openscience/cdk/AtomContainer.java: Added info on what to use instead of the deprecated method
16:44 CIA-60 cdk: egonw * r13600 /cdk/branches/cdk-1.2.x/src/test/org/op​enscience/cdk/ReactionSchemeTest.java: Fixed super class: should be IReactionSchemeTest, not IReactionSetTest
16:52 CIA-60 cdk: egonw * r13601 /cdk/branches/cdk-1.2.x/src/test/org/opensc​ience/cdk/interfaces/IPDBPolymerTest.java: Implemented two unit tests; Removed the third which was supposed to test the getMonomerNamesInSequentialOrder() method which does actually not exist in IPDBPolymer
16:59 CIA-60 cdk: egonw * r13602 /cdk/branches/cdk-1.2.x/src/te​st/org/openscience/cdk/debug/ (4 files): Adding missing constructor unit tests
17:00 CIA-60 cdk: egonw * r13603 /cdk/branches/cdk-1.2.x/src​/test/org/openscience/cdk/ (3 files in 2 dirs): Test the impl constructor only, not the IChemObjectBuilder wrapper, which is tested elsewhere
17:41 jbrefort joined #cdk
18:44 CIA-60 cdk: rajarshi * r13604 /cdk/branches/cdk-1.2.x/src/main/org/ope​nscience/cdk/io/cml/CMLCoreModule.java: Updated so that atoms read in from the CML file are configured for isotope information. This brings it in line with the MDL reader, so that molecules read from CML or MDL are identical. fixes bug #1014344
18:44 zarah bug #1014344 | http://tinyurl.com/672vzv
18:56 CIA-60 cdk: rajarshi * r13605 /cdk/branches/cdk-1.2.x/src/t​est/data/cml/bug1535055.cml: added test case for a bug
19:07 CIA-60 cdk: rajarshi * r13606 /cdk/branches/cdk-1.2.x/src/test/org/openscie​nce/cdk/gui/smiles/SmilesGeneratorTest.java: Added a test for bug #1535055, which now works fine
19:07 zarah bug #1535055 | http://tinyurl.com/5ght2q
20:58 egonw joined #cdk
21:10 jbrefort joined #cdk
21:37 CIA-60 cdk: egonw * r13607 /cdk/branches/cdk-1.2.x/src/te​st/org/openscience/cdk/debug/ (9 files): Added missing constructor unit tests
21:37 CIA-60 cdk: egonw * r13608 /cdk/branches/cdk-1.2.x/src​/test/org/openscience/cdk/ (5 files in 2 dirs): Test the impl constructor only, not the IChemObjectBuilder wrapper, which is tested elsewhere
22:16 CIA-60 cdk: egonw * r13609 /cdk/branches/cdk-1.2.x/src/main/org/ope​nscience/cdk/io/cml/CMLCoreModule.java: Removed dependency on DefaultChemObjectBuilder, fixing a build fail

| Channels | #cdk index | Today | | Search | Google Search | Plain-Text | summary