Camelia, the Perl 6 bug

IRC log for #cdk, 2009-01-03

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All times shown according to UTC.

Time Nick Message
00:59 timvdm joined #cdk
08:46 egonw joined #cdk
09:08 CIA-60 cdk: egonw * r13723 /cdk/branches/egonw-ioformats/: Setting up a branch, to split up 'io' into 'io' and 'ioformats'.
09:11 Topic for #cdkis now The Chemistry Development Kit (http://cdk.sf.net) | JUnit CDK 1.2.x: 15112, 130 fails + 42 errors (1.14%) | Logs at http://moritz.faui2k3.org/​irclog/out.pl?channel=cdk | CDK News paper online on pharmacophores: http://www.cdknews.org/ | CDK News Feed: http://beta.friendfeed.com/ro​oms/chemistry-development-kit
09:33 egonw joined #cdk
10:44 edrin joined #cdk
11:00 bag_ joined #cdk
11:51 CIA-60 cdk: paulturner * r13724 /cdk/branches/paulturner-juniorjobs/s​rc/test/org/openscience/cdk/formula/ (IsotopePatternGeneratorTest.java MassToFormulaToolTest.java):
11:51 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
11:51 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
11:51 CIA-60 cdk: -Javadoc updated to reflect new method signature
11:51 CIA-60 cdk: -Unnecessary Exception subclass imports removed
14:00 CIA-60 cdk: paulturner * r13725 /cdk/branches/paulturner-juniorjobs/src/test​/org/openscience/cdk/io/Mol2ReaderTest.java:
14:00 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
14:00 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
14:00 CIA-60 cdk: -Javadoc updated to reflect new method signature
14:00 CIA-60 cdk: -Unnecessary Exception subclass imports removed
14:01 CIA-60 cdk: paulturner * r13726 /cdk/branches/paulturner-juniorjobs/s​rc/test/org/openscience/cdk/tools/man​ipulator/RingSetManipulatorTest.java:
14:01 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
14:01 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
14:01 CIA-60 cdk: -Javadoc updated to reflect new method signature
14:01 CIA-60 cdk: -Unnecessary Exception subclass imports removed
14:02 CIA-60 cdk: egonw * r13727 /cdk/branches/egonw-ioformats/ (81 files in 3 dirs): Moved the two annotation classes into a separate module
14:02 CIA-60 cdk: egonw * r13728 /cdk/branches/egonw-ioformats/src/main/org/​openscience/cdk/io/formats/HINFormat.java: Removed depedency on MathTools
14:03 CIA-60 cdk: egonw * r13729 /cdk/branches/egonw-ioformats/src/main/org​/openscience/cdk/tools/DataFeatures.java: Moved to the annotation module, allowing use of it without pulling deps on interfaces and core too
14:08 CIA-60 cdk: egonw * r13730 /cdk/branches/egonw-ioformats/ (196 files in 6 dirs):
14:08 CIA-60 cdk: Introduced a ioformats module (along with test-ioformats), which can now be used
14:08 CIA-60 cdk: without pulling interfaces, core and the full io modules too. This allows the
14:08 CIA-60 cdk: format matchers to be used without depending on much of the CDK.
14:24 CIA-60 cdk: egonw * r13731 /cdk/branches/cdk-1.2.x/src/main/org/ope​nscience/cdk/io/formats/CMLFormat.java: Fixed URL: this one works
14:49 CIA-60 cdk: egonw * r13732 /cdk/trunk/work.txt: Added list of cdk1.2.x patches that are up for inclusion trunk
14:53 CIA-60 cdk: paulturner * r13733 /cdk/branches/paulturner-juniorjobs/src/​test/org/openscience/cdk/tools/manipulat​or/MolecularFormulaManipulatorTest.java:
14:53 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
14:53 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
14:53 CIA-60 cdk: -Javadoc updated to reflect new method signature
14:53 CIA-60 cdk: -Unnecessary Exception subclass imports removed
15:01 CIA-60 cdk: egonw * r13734 /cdk/trunk/src/main/org/opens​cience/cdk/io/HINReader.java: Fixed code to properly bond atoms in the HIN file. Fixes bug 2126904
15:12 CIA-60 cdk: paulturner * r13735 /cdk/branches/paulturner-juniorjobs​/src/test/org/openscience/cdk/smile​s/smarts/SMARTSQueryToolTest.java:
15:12 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
15:12 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
15:12 CIA-60 cdk: -Javadoc updated to reflect new method signature
15:12 CIA-60 cdk: -Unnecessary Exception subclass imports removed
15:16 CIA-60 cdk: egonw * r13736 /cdk/trunk/src/test/org/openscience/cdk/​atomtype/SybylAtomTypeMatcherTest.java:
15:16 CIA-60 cdk: Applied patch from cdk1.2.x:
15:16 CIA-60 cdk: Removed test: bonding pattern suggests charges, but missing; atom types suggest neutral... no way a machine can make sense of this :(
15:16 CIA-60 cdk: Author: egonw <egonw@eb4e18e3-b210-0410-a6ab-dec725e4b171>
15:17 CIA-60 cdk: egonw * r13737 /cdk/trunk/src/ (2 files in 2 dirs):
15:17 CIA-60 cdk: Applied patch from cdk1.2.x:
15:17 CIA-60 cdk:  Added perception of P-with-3-single-electrons again... not sure how that got lost... :(
15:17 CIA-60 cdk: Author: egonw <egonw@eb4e18e3-b210-0410-a6ab-dec725e4b171>
15:17 CIA-60 cdk: paulturner * r13738 /cdk/branches/paulturner-juniorjobs/src/test/o​rg/openscience/cdk/qsar/descriptors/molecular/ (4 files):
15:17 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
15:17 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
15:17 CIA-60 cdk: -Javadoc updated to reflect new method signature
15:17 CIA-60 cdk: -Unnecessary Exception subclass imports removed
15:17 CIA-60 cdk: egonw * r13739 /cdk/trunk/src/test/org/openscience​/cdk/smiles/SmilesParserTest.java:
15:17 CIA-60 cdk: Applied patch from cdk1.2.x:
15:17 CIA-60 cdk: Updated test now that H hybridization is defined as IAtomType.Hybridization.S
15:17 CIA-60 cdk: Author: egonw <egonw@eb4e18e3-b210-0410-a6ab-dec725e4b171>
15:18 CIA-60 cdk: egonw * r13740 /cdk/trunk/src/main/org/openscience/c​dk/atomtype/CDKAtomTypeMatcher.java:
15:18 CIA-60 cdk: Applied patch from cdk1.2.x:
15:18 CIA-60 cdk: Fixed a NPE
15:18 CIA-60 cdk: Author: egonw <egonw@eb4e18e3-b210-0410-a6ab-dec725e4b171>
15:18 CIA-60 cdk: paulturner * r13741 /cdk/branches/paulturner-juniorjobs​/src/test/org/openscience/cdk/smile​s/smarts/parser/RecursiveTest.java:
15:18 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
15:18 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
15:18 CIA-60 cdk: -Javadoc updated to reflect new method signature
15:18 CIA-60 cdk: -Unnecessary Exception subclass imports removed
15:18 CIA-60 cdk: egonw * r13742 /cdk/trunk/build.xml:
15:18 CIA-60 cdk: Applied patch from cdk1.2.x:
15:18 CIA-60 cdk: Typo fixed
15:18 CIA-60 cdk: Author: egonw <egonw@eb4e18e3-b210-0410-a6ab-dec725e4b171>
15:19 CIA-60 cdk: paulturner * r13743 /cdk/branches/paulturner-juniorjobs/src​/test/org/openscience/cdk/tools/manipul​ator/AtomContainerManipulatorTest.java:
15:19 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
15:19 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
15:19 CIA-60 cdk: -Javadoc updated to reflect new method signature
15:19 CIA-60 cdk: -Unnecessary Exception subclass imports removed
15:19 CIA-60 cdk: egonw * r13744 /cdk/trunk/src/test/org/openscience/cdk/atomtype/ (5 files): (log message trimmed)
15:19 CIA-60 cdk: Applied patch from cdk1.2.x:
15:19 CIA-60 cdk: Upgraded atom type testing for Sybyl atom types: because the mol2 test files are so crappy, I want explicit tests
15:19 CIA-60 cdk: instead. Refactored code to share generic code with CDK atom type matching and
15:19 CIA-60 cdk: adding three methods that allows customization: getAtomTypeName()
15:19 CIA-60 cdk: getAtomTypeMatcher getFactory(). Resulting, three layers: AbstractAtomTypeTest
15:19 CIA-60 cdk: with the generic code, the Abstract[CDK|Sybyl]AtomTypeMatcher for the
15:20 CIA-60 cdk: egonw * r13745 /cdk/trunk/work.txt: First few patches from cdk1.2.x merged
15:20 CIA-60 cdk: paulturner * r13746 /cdk/branches/paulturner-juniorjobs/src/te​st/org/openscience/cdk/qsar/descriptors/at​omic/IPAtomicLearningDescriptorTest.java:
15:20 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
15:20 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
15:20 CIA-60 cdk: -Javadoc updated to reflect new method signature
15:21 CIA-60 cdk: -Unnecessary Exception subclass imports removed
15:29 CIA-60 cdk: paulturner * r13747 /cdk/branches/paulturner-juniorjobs​/src/test/org/openscience/cdk/atomt​ype/EStateAtomTypeMatcherTest.java:
15:29 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
15:29 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
15:29 CIA-60 cdk: -Javadoc updated to reflect new method signature
15:29 CIA-60 cdk: -Unnecessary Exception subclass imports removed
15:31 CIA-60 cdk: paulturner * r13748 /cdk/branches/paulturner-juniorjob​s/src/test/org/openscience/cdk/ato​mtype/CDKAtomTypeMatcherTest.java:
15:31 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
15:31 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
15:31 CIA-60 cdk: -Javadoc updated to reflect new method signature
15:31 CIA-60 cdk: -Unnecessary Exception subclass imports removed
15:42 CIA-60 cdk: egonw * r13749 /cdk/trunk/src/main/org/openscien​ce/cdk/io/cml/CMLCoreModule.java:
15:42 CIA-60 cdk: Applied patch from cdk1.2.x:
15:42 CIA-60 cdk: Topy in comments
15:42 CIA-60 cdk: Author: egonw <egonw@eb4e18e3-b210-0410-a6ab-dec725e4b171>
15:43 CIA-60 cdk: egonw * r13750 /cdk/trunk/src/main/org/openscien​ce/cdk/io/cml/CMLCoreModule.java:
15:43 CIA-60 cdk: Applied patch from cdk1.2.x:
15:43 CIA-60 cdk: Fixed implicit hydrogen count (patch by Rajarshi)
15:43 CIA-60 cdk: Author: egonw <egonw@eb4e18e3-b210-0410-a6ab-dec725e4b171>
15:43 CIA-60 cdk: egonw * r13751 /cdk/trunk/src/test/org/openscience/cdk/io/cml/ (CML23FragmentsTest.java cml23TestFramework.xml):
15:43 CIA-60 cdk: Applied patch from cdk1.2.x:
15:43 CIA-60 cdk: Added test for bug #2142400
15:43 CIA-60 cdk: Author: egonw <egonw@eb4e18e3-b210-0410-a6ab-dec725e4b171>
15:43 jonalv joined #cdk
15:44 CIA-60 cdk: egonw * r13752 /cdk/trunk/src/main/org/openscien​ce/cdk/io/cml/CMLCoreModule.java:
15:44 CIA-60 cdk: Applied patch from cdk1.2.x:
15:44 CIA-60 cdk: Convert CML into CDK hydrogenCounts (closes #2142400)
15:44 CIA-60 cdk: Author: egonw <egonw@eb4e18e3-b210-0410-a6ab-dec725e4b171>
15:44 CIA-60 cdk: egonw * r13753 /cdk/trunk/doc/refs/cheminf.bibx:
15:44 CIA-60 cdk: Applied patch from cdk1.2.x:
15:44 CIA-60 cdk: Added missing reference: kind2007
15:44 CIA-60 cdk: Author: egonw <egonw@eb4e18e3-b210-0410-a6ab-dec725e4b171>
15:45 CIA-60 cdk: egonw * r13754 /cdk/trunk/ (2 files in 2 dirs):
15:45 CIA-60 cdk: Applied patch from cdk1.2.x:
15:45 CIA-60 cdk: Added missing KAB78 reference
15:45 CIA-60 cdk: Author: egonw <egonw@eb4e18e3-b210-0410-a6ab-dec725e4b171>
15:45 CIA-60 cdk: egonw * r13755 /cdk/trunk/src/main/org/openscience/cdk/grap​h/invariant/EquivalentClassPartitioner.java:
15:45 CIA-60 cdk: Applied patch from cdk1.2.x:
15:45 CIA-60 cdk: Fixed ID to match references in doc/refs/cheminf.xml
15:45 CIA-60 cdk: git-svn-id:
15:45 CIA-60 cdk: https://cdk.svn.sourceforge.net/svnr​oot/cdk/cdk/branches/cdk-1.2.x@12534 eb4e18e3-b210-0410-a6ab-dec725e4b171
15:45 CIA-60 cdk: Author: egonw <egonw@eb4e18e3-b210-0410-a6ab-dec725e4b171>
16:58 CIA-60 cdk: egonw * r13756 /cdk/trunk/build.xml:
16:58 CIA-60 cdk: Applied patch from cdk1.2.x:
16:58 CIA-60 cdk: Fixed bad variable syntax
16:58 CIA-60 cdk: git-svn-id:
16:58 CIA-60 cdk: https://cdk.svn.sourceforge.net/svnr​oot/cdk/cdk/branches/cdk-1.2.x@12539 eb4e18e3-b210-0410-a6ab-dec725e4b171
16:58 CIA-60 cdk: Author: egonw <egonw@eb4e18e3-b210-0410-a6ab-dec725e4b171>
16:59 CIA-60 cdk: egonw * r13757 /cdk/trunk/src/cdk-apps.manifest:
16:59 CIA-60 cdk: Applied patch from cdk1.2.x:
16:59 CIA-60 cdk: Removed obsolete file
16:59 CIA-60 cdk: git-svn-id:
16:59 CIA-60 cdk: https://cdk.svn.sourceforge.net/svnr​oot/cdk/cdk/branches/cdk-1.2.x@12540 eb4e18e3-b210-0410-a6ab-dec725e4b171
16:59 CIA-60 cdk: Author: egonw <egonw@eb4e18e3-b210-0410-a6ab-dec725e4b171>
16:59 CIA-60 cdk: egonw * r13758 /cdk/trunk/ (3 files in 2 dirs):
16:59 CIA-60 cdk: Applied patch from cdk1.2.x:
16:59 CIA-60 cdk: Fixing sourcedist building: fixes paths, smarts/*.jtt to include; release with Jonathan's Jumbo build
16:59 CIA-60 cdk: git-svn-id:
16:59 CIA-60 cdk: https://cdk.svn.sourceforge.net/svnr​oot/cdk/cdk/branches/cdk-1.2.x@12541 eb4e18e3-b210-0410-a6ab-dec725e4b171
16:59 CIA-60 cdk: Author: egonw <egonw@eb4e18e3-b210-0410-a6ab-dec725e4b171>
17:00 CIA-60 cdk: egonw * r13759 /cdk/trunk/build.xml:
17:00 CIA-60 cdk: Applied patch from cdk1.2.x:
17:00 CIA-60 cdk: Include test source files too
17:00 CIA-60 cdk: git-svn-id:
17:00 CIA-60 cdk: https://cdk.svn.sourceforge.net/svnr​oot/cdk/cdk/branches/cdk-1.2.x@12542 eb4e18e3-b210-0410-a6ab-dec725e4b171
17:00 CIA-60 cdk: Author: egonw <egonw@eb4e18e3-b210-0410-a6ab-dec725e4b171>
17:00 CIA-60 cdk: egonw * r13760 /cdk/trunk/.gitignore:
17:00 CIA-60 cdk: Applied patch from cdk1.2.x:
17:00 CIA-60 cdk: Ignore sourcedist creations
17:00 CIA-60 cdk: git-svn-id:
17:00 CIA-60 cdk: https://cdk.svn.sourceforge.net/svnr​oot/cdk/cdk/branches/cdk-1.2.x@12543 eb4e18e3-b210-0410-a6ab-dec725e4b171
17:00 CIA-60 cdk: Author: egonw <egonw@eb4e18e3-b210-0410-a6ab-dec725e4b171>
17:01 CIA-60 cdk: egonw * r13761 /cdk/trunk/README:
17:01 CIA-60 cdk: Applied patch from cdk1.2.x:
17:01 CIA-60 cdk: Added notice about testing not being available from sourcedists
17:01 CIA-60 cdk: git-svn-id:
17:01 CIA-60 cdk: https://cdk.svn.sourceforge.net/svnr​oot/cdk/cdk/branches/cdk-1.2.x@12544 eb4e18e3-b210-0410-a6ab-dec725e4b171
17:01 CIA-60 cdk: Author: egonw <egonw@eb4e18e3-b210-0410-a6ab-dec725e4b171>
17:01 CIA-60 cdk: egonw * r13762 /cdk/trunk/build.xml:
17:01 CIA-60 cdk: Applied patch from cdk1.2.x:
17:01 CIA-60 cdk: More updates to get the sourcedist working
17:01 CIA-60 cdk: git-svn-id:
17:01 CIA-60 cdk: https://cdk.svn.sourceforge.net/svnr​oot/cdk/cdk/branches/cdk-1.2.x@12545 eb4e18e3-b210-0410-a6ab-dec725e4b171
17:01 CIA-60 cdk: Author: egonw <egonw@eb4e18e3-b210-0410-a6ab-dec725e4b171>
17:06 CIA-60 cdk: egonw * r13763 /cdk/trunk/src/main/org/openscience/cdk/ (51 files in 15 dirs):
17:06 CIA-60 cdk: Applied patch from cdk1.2.x:
17:06 CIA-60 cdk: First batch of JavaDoc fixes
17:06 CIA-60 cdk: git-svn-id:
17:06 CIA-60 cdk: https://cdk.svn.sourceforge.net/svnr​oot/cdk/cdk/branches/cdk-1.2.x@12555 eb4e18e3-b210-0410-a6ab-dec725e4b171
17:06 CIA-60 cdk: Author: egonw <egonw@eb4e18e3-b210-0410-a6ab-dec725e4b171>
17:08 CIA-60 cdk: egonw * r13764 /cdk/trunk/src/main/org/openscience/cdk/ (29 files in 13 dirs):
17:08 CIA-60 cdk: Applied patch from cdk1.2.x (conflicts manually resolved in one file):
17:08 CIA-60 cdk: Second batch of JavaDoc fixes
17:08 CIA-60 cdk: Author: egonw <egonw@eb4e18e3-b210-0410-a6ab-dec725e4b171>
17:09 CIA-60 cdk: egonw * r13765 /cdk/trunk/src/main/org/opensci​ence/cdk/isomorphism/matchers/ (IQueryAtom.java IQueryAtomContainer.java):
17:09 CIA-60 cdk: Applied patch from cdk1.2.x:
17:09 CIA-60 cdk: Rmoved unescessary import reducing a dependnecy
17:09 CIA-60 cdk: git-svn-id:
17:09 CIA-60 cdk: https://cdk.svn.sourceforge.net/svnr​oot/cdk/cdk/branches/cdk-1.2.x@12558 eb4e18e3-b210-0410-a6ab-dec725e4b171
17:09 CIA-60 cdk: Author: rajarshi <rajarshi@eb4e18e3-b210-0410-a6ab-dec725e4b171>
17:10 CIA-60 cdk: egonw * r13766 /cdk/trunk/ (2 files in 2 dirs): Applied another set of patches from cdk1.2.x (633 left)
17:39 jonalv egonw++ // I have no idea about what he is doing but all these commits must be worth a karma
18:03 egonw jonalv: these commits are patches from teh cdk1.2.x branch
18:04 egonw to make CDK trunk be cdk1.2.x plus more again
18:41 CIA-60 cdk: paulturner * r13767 /cdk/branches/paulturner-juniorjobs/src/test/org/o​penscience/cdk/atomtype/AbstractAtomTypeTest.java:
18:41 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
18:41 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
18:41 CIA-60 cdk: -Javadoc updated to reflect new method signature
18:41 CIA-60 cdk: -Unnecessary Exception subclass imports removed
18:42 CIA-60 cdk: paulturner * r13768 /cdk/branches/paulturner-juniorjobs/​src/test/org/openscience/cdk/aromati​city/AromaticityCalculatorTest.java:
18:42 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
18:42 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
18:42 CIA-60 cdk: -Javadoc updated to reflect new method signature
18:42 CIA-60 cdk: -Unnecessary Exception subclass imports removed
18:43 CIA-60 cdk: paulturner * r13769 /cdk/branches/paulturner-juniorjobs/src​/test/org/openscience/cdk/aromaticity/C​DKHueckelAromaticityDetectorTest.java:
18:43 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
18:43 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
18:43 CIA-60 cdk: -Javadoc updated to reflect new method signature
18:43 CIA-60 cdk: -Unnecessary Exception subclass imports removed
18:45 CIA-60 cdk: paulturner * r13770 /cdk/branches/paulturner-juniorjobs/​src/test/org/openscience/cdk/atomtyp​e/StructGenAtomTypeGuesserTest.java:
18:47 CIA-60 cdk: paulturner * r13771 /cdk/branches/paulturner-juniorjobs/src/test/org/o​penscience/cdk/atomtype/StructGenMatcherTest.java:
18:47 CIA-60 cdk: paulturner * r13772 /cdk/branches/paulturner-juniorjobs/src/test​/org/openscience/cdk/iupac/ParserTest.java:
18:47 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
18:47 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
18:47 CIA-60 cdk: -Javadoc updated to reflect new method signature
18:47 CIA-60 cdk: -Unnecessary Exception subclass imports removed
18:49 CIA-60 cdk: paulturner * r13773 /cdk/branches/paulturner-juniorjobs/s​rc/test/org/openscience/cdk/limitatio​ns/tools/SaturationCheckerTest.java:
18:49 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
18:49 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
18:49 CIA-60 cdk: -Javadoc updated to reflect new method signature
18:49 CIA-60 cdk: -Unnecessary Exception subclass imports removed
18:50 CIA-60 cdk: paulturner * r13774 /cdk/branches/paulturner-juniorjobs/s​rc/test/org/openscience/cdk/pharmacop​hore/PharmacophoreMatcherTest.java:
18:50 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
18:50 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
18:50 CIA-60 cdk: -Javadoc updated to reflect new method signature
18:50 CIA-60 cdk: -Unnecessary Exception subclass imports removed
18:51 CIA-60 cdk: paulturner * r13775 /cdk/branches/paulturner-juniorjobs/s​rc/test/org/openscience/cdk/pharmacop​hore/PharmacophoreUtilityTest.java:
18:51 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
18:51 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
18:51 CIA-60 cdk: -Javadoc updated to reflect new method signature
18:51 CIA-60 cdk: -Unnecessary Exception subclass imports removed
18:52 CIA-60 cdk: paulturner * r13776 /cdk/branches/paulturner-juniorjobs/src/test/org​/openscience/cdk/qsar/DescriptorNamesTest.java:
18:52 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
18:52 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
18:52 CIA-60 cdk: -Javadoc updated to reflect new method signature
18:52 CIA-60 cdk: -Unnecessary Exception subclass imports removed
18:53 CIA-60 cdk: paulturner * r13777 /cdk/branches/paulturner-juniorjobs/src/t​est/org/openscience/cdk/qsar/descriptors/​bond/IPBondLearningDescriptorTest.java:
18:53 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
18:53 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
18:53 CIA-60 cdk: -Javadoc updated to reflect new method signature
18:53 CIA-60 cdk: -Unnecessary Exception subclass imports removed
18:54 CIA-60 cdk: paulturner * r13778 /cdk/branches/paulturner-juniorjobs/src/t​est/org/openscience/cdk/qsar/descriptors/​molecular/BondCountDescriptorTest.java:
18:54 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
18:54 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
18:54 CIA-60 cdk: -Javadoc updated to reflect new method signature
18:54 CIA-60 cdk: -Unnecessary Exception subclass imports removed
18:55 CIA-60 cdk: paulturner * r13779 /cdk/branches/paulturner-juniorjobs/src/t​est/org/openscience/cdk/qsar/descriptors/​molecular/CarbonTypesDescriptorTest.java:
18:55 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
18:55 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
18:55 CIA-60 cdk: -Javadoc updated to reflect new method signature
18:55 CIA-60 cdk: -Unnecessary Exception subclass imports removed
18:56 CIA-60 cdk: paulturner * r13780 /cdk/branches/paulturner-juniorjobs/src/te​st/org/openscience/cdk/qsar/descriptors/mo​lecular/ChiPathClusterDescriptorTest.java:
18:56 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
18:56 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
18:56 CIA-60 cdk: -Javadoc updated to reflect new method signature
18:56 CIA-60 cdk: -Unnecessary Exception subclass imports removed
18:57 CIA-60 cdk: paulturner * r13781 /cdk/branches/paulturner-juniorjobs/src​/test/org/openscience/cdk/qsar/descript​ors/molecular/CPSADescriptorTest.java:
18:57 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
18:57 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
18:57 CIA-60 cdk: -Javadoc updated to reflect new method signature
18:57 CIA-60 cdk: -Unnecessary Exception subclass imports removed
18:57 CIA-60 cdk: paulturner * r13782 /cdk/branches/paulturner-juniorjobs/src/te​st/org/openscience/cdk/qsar/descriptors/mo​lecular/AminoAcidCountDescriptorTest.java:
18:57 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
18:57 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
18:57 CIA-60 cdk: -Javadoc updated to reflect new method signature
18:58 CIA-60 cdk: -Unnecessary Exception subclass imports removed
18:58 CIA-60 cdk: paulturner * r13783 /cdk/branches/paulturner-juniorjobs/src/tes​t/org/openscience/cdk/qsar/descriptors/mole​cular/PetitjeanNumberDescriptorTest.java:
18:58 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
18:58 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
18:58 CIA-60 cdk: -Javadoc updated to reflect new method signature
18:58 CIA-60 cdk: -Unnecessary Exception subclass imports removed
18:59 CIA-60 cdk: paulturner * r13784 /cdk/branches/paulturner-juniorjobs/src/test​/org/openscience/cdk/qsar/descriptors/molecu​lar/PetitjeanShapeIndexDescriptorTest.java:
18:59 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
18:59 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
18:59 CIA-60 cdk: -Javadoc updated to reflect new method signature
18:59 CIA-60 cdk: -Unnecessary Exception subclass imports removed
19:00 CIA-60 cdk: paulturner * r13785 /cdk/branches/paulturner-juniorjobs/​src/test/org/openscience/cdk/smiles/​smarts/parser/SMARTSSearchTest.java:
19:00 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
19:00 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
19:00 CIA-60 cdk: -Javadoc updated to reflect new method signature
19:00 CIA-60 cdk: -Unnecessary Exception subclass imports removed
19:01 CIA-60 cdk: paulturner * r13786 /cdk/branches/paulturner-juniorjobs/src/tes​t/org/openscience/cdk/io/cml/CML2Test.java:
19:01 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
19:01 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
19:01 CIA-60 cdk: -Javadoc updated to reflect new method signature
19:01 CIA-60 cdk: -Unnecessary Exception subclass imports removed
19:03 CIA-60 cdk: paulturner * r13787 /cdk/branches/paulturner-juniorjobs/src/test/or​g/openscience/cdk/io/cml/CMLRoundTripTest.java:
19:03 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
19:03 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
19:03 CIA-60 cdk: -Javadoc updated to reflect new method signature
19:03 CIA-60 cdk: -Unnecessary Exception subclass imports removed
19:04 CIA-60 cdk: paulturner * r13788 /cdk/branches/paulturner-juniorjobs/src/test/o​rg/openscience/cdk/io/MDLV2000ReaderTest.java:
19:04 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
19:04 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
19:04 CIA-60 cdk: -Javadoc updated to reflect new method signature
19:04 CIA-60 cdk: -Unnecessary Exception subclass imports removed
19:05 CIA-60 cdk: paulturner * r13789 /cdk/branches/paulturner-juniorjobs/src/test/or​g/openscience/cdk/io/MDLCMLRoundtripTest.java:
19:05 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
19:05 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
19:05 CIA-60 cdk: -Javadoc updated to reflect new method signature
19:05 CIA-60 cdk: -Unnecessary Exception subclass imports removed
19:06 CIA-60 cdk: paulturner * r13790 /cdk/branches/paulturner-juniorjobs/src/test/​org/openscience/cdk/io/GamessReaderTest.java:
19:06 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
19:06 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
19:06 CIA-60 cdk: -Javadoc updated to reflect new method signature
19:06 CIA-60 cdk: -Unnecessary Exception subclass imports removed
19:07 CIA-60 cdk: paulturner * r13791 /cdk/branches/paulturner-juniorjobs/src/test/​org/openscience/cdk/graph/PathToolsTest.java:
19:07 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
19:07 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
19:07 CIA-60 cdk: -Javadoc updated to reflect new method signature
19:07 CIA-60 cdk: -Unnecessary Exception subclass imports removed
19:08 CIA-60 cdk: paulturner * r13792 /cdk/branches/paulturner-juniorjobs/src/test/org/o​penscience/cdk/graph/ConnectivityCheckerTest.java:
19:08 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
19:08 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
19:08 CIA-60 cdk: -Javadoc updated to reflect new method signature
19:08 CIA-60 cdk: -Unnecessary Exception subclass imports removed
19:09 CIA-60 cdk: paulturner * r13793 /cdk/branches/paulturner-juniorjobs/src/t​est/org/openscience/cdk/RingSetTest.java:
19:09 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
19:09 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
19:09 CIA-60 cdk: -Javadoc updated to reflect new method signature
19:09 CIA-60 cdk: -Unnecessary Exception subclass imports removed
19:10 CIA-60 cdk: paulturner * r13794 /cdk/branches/paulturner-juniorjobs/sr​c/test/org/openscience/cdk/isomorphism​/UniversalIsomorphismTesterTest.java:
19:10 CIA-60 cdk: Fix for junior job: [ 1837692 ] Test methods should throw only one Exception.
19:10 CIA-60 cdk: -Throws clause for public methods marked by @Test annotation or with name test* changed to Exception only
19:10 CIA-60 cdk: -Javadoc updated to reflect new method signature
19:10 CIA-60 cdk: -Unnecessary Exception subclass imports removed
20:08 CIA-60 cdk: paulturner * r13795 /cdk/branches/paulturner-jj1864371/: paulturner:create branch of trunk for junior job 1864371

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