Camelia, the Perl 6 bug

IRC log for #cdk, 2009-01-06

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All times shown according to UTC.

Time Nick Message
00:12 CIA-60 cdk: rajarshi * r13805 /cdk/branches/cdk-1.2.x/src/main/org​/openscience/cdk/qsar/descriptors/mo​lecular/WeightedPathDescriptor.java: Fixed a typo in the Javadocs
00:19 CIA-60 cdk: rajarshi * r13806 /cdk/branches/cdk-1.2.x/src/main/org​/openscience/cdk/qsar/descriptors/mo​lecular/WeightedPathDescriptor.java: Updates to the Javadocs
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00:31 CIA-60 cdk: rajarshi * r13807 /cdk/branches/cdk-1.2.x/src/test/or​g/openscience/cdk/tools/manipulator​/AtomContainerManipulatorTest.java: Added a test case for H addition to ethane since it's behaving wierd elsewhere
00:49 CIA-60 cdk: rajarshi * r13808 /cdk/branches/cdk-1.2.x/src/test/org/opensc​ience/cdk/tools/CDKHydrogenAdderTest.java: added another test case just to be sure that preset imp H count doesn't affect things
00:52 CIA-60 cdk: rajarshi * r13809 /cdk/branches/cdk-1.2.x/src/test/org/​openscience/cdk/qsar/descriptors/mole​cular/MolecularDescriptorTest.java: Fixed an idiotic typo in the test code for checking imp/exp H's. Was missing a bond
00:54 CIA-60 cdk: rajarshi * r13810 /cdk/branches/cdk-1.2.x/src/test/or​g/openscience/cdk/qsar/descriptors/​molecular/ALOGPDescriptorTest.java: Updated test since th edescriptor will always add explicit H's itself
03:24 CIA-60 cdk: rajarshi * r13811 /cdk/branches/cdk-1.2.x/src/main/org/op​enscience/cdk/qsar/descriptors/molecula​r/LongestAliphaticChainDescriptor.java: cleaned up code and updated so that it correctly handles implicit and explicit hydrogens
03:37 CIA-60 cdk: rajarshi * r13812 /cdk/branches/cdk-1.2.x/src/main/org/​openscience/cdk/qsar/descriptors/mole​cular/KierHallSmartsDescriptor.java: updated so that it correctly handles implicit and explicit hydrogens
03:47 CIA-60 cdk: rajarshi * r13813 /cdk/branches/cdk-1.2.x/src/test/org/openscience​/cdk/smiles/smarts/parser/SMARTSSearchTest.java: Added a test for explicit H's
03:52 CIA-60 cdk: rajarshi * r13814 /cdk/branches/cdk-1.2.x/src/test/org/openscience​/cdk/smiles/smarts/parser/SMARTSSearchTest.java: Added another test case
04:04 CIA-60 cdk: rajarshi * r13815 /cdk/branches/cdk-1.2.x/src/test/org/open​science/cdk/smiles/SmilesParserTest.java: Added a test case for parsing explicit H's
04:10 CIA-60 cdk: rajarshi * r13816 /cdk/branches/cdk-1.2.x/src/test/org/open​science/cdk/smiles/SmilesParserTest.java: Added another test case for explcit H
04:12 CIA-60 cdk: rajarshi * r13817 /cdk/branches/cdk-1.2.x/src/test/org/openscience​/cdk/smiles/smarts/parser/SMARTSSearchTest.java: Added bug annotation for a problem in matching an explicit H
04:18 CIA-60 cdk: rajarshi * r13818 /cdk/branches/cdk-1.2.x/src/test/org/openscience​/cdk/smiles/smarts/parser/SMARTSSearchTest.java: Updated test case
04:20 CIA-60 cdk: rajarshi * r13819 /cdk/branches/cdk-1.2.x/src/test/org/openscience​/cdk/smiles/smarts/parser/SMARTSSearchTest.java: Updated test case to be more clearer about the bug
05:59 CIA-60 cdk: rajarshi * r13820 /cdk/branches/cdk-1.2.x/src/test/org/openscience​/cdk/smiles/smarts/parser/SMARTSSearchTest.java: Added a test case for * against explicit H target
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08:56 thomas_ku moin
08:56 zarah hi thomas_ku
09:06 carsten joined #cdk
10:42 jpansanel moin
10:42 zarah hi jpansanel
10:42 jpansanel Happy New Year !!!
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14:16 CIA-61 cdk: rajarshi * r13821 /cdk/branches/cdk-1.2.x/src/test/org/open​science/cdk/smiles/SmilesParserTest.java: Updated expected value since what I thought was a bug, is not really a bug
14:24 CIA-61 cdk: rajarshi * r13822 /cdk/branches/cdk-1.2.x/src/test/org/openscience​/cdk/smiles/smarts/parser/SMARTSSearchTest.java: renamed test method to be mor emeaningful
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14:53 CIA-61 cdk: rajarshi * r13823 /cdk/branches/cdk-1.2.x/src/main/org/​openscience/cdk/isomorphism/matchers/​smarts/ExplicitConnectionAtom.java: Updated code to note that degree should not consider connections to explicit H's. Thus rather than deducting the implicit H count, we deduct the total (implicit+explicit) H count from the initial atom degree
15:00 CIA-61 cdk: rajarshi * r13824 /cdk/branches/cdk-1.2.x/src/test/org/openscience​/cdk/smiles/smarts/parser/SMARTSSearchTest.java: Added another test case for degree token
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15:17 CIA-61 cdk: rajarshi * r13825 /cdk/branches/cdk-1.2.x/src/main/org/​openscience/cdk/isomorphism/matchers/​smarts/ExplicitConnectionAtom.java: removed boxing
15:55 CIA-61 cdk: rajarshi * r13826 /cdk/branches/cdk-1.2.x/src/test/org/openscience​/cdk/smiles/smarts/parser/SMARTSSearchTest.java: Cleaned up tests - split multiple tests into individual test cases, grouped appropriately
16:10 CIA-61 cdk: rajarshi * r13827 /cdk/branches/cdk-1.2.x/src/test/org/openscience​/cdk/smiles/smarts/parser/SMARTSSearchTest.java: Added more test cases
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