Camelia, the Perl 6 bug

IRC log for #cdk, 2009-01-07

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All times shown according to UTC.

Time Nick Message
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12:03 jpansanel moin
12:03 zarah hi jpansanel
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16:15 CIA-61 cdk: egonw * r13828 /cdk/branches/cdk-1.2.x/build.xml: Added missing jar to dist-pure: atomtype
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16:30 CIA-61 cdk: egonw * r13829 /cdk/tags/cdk-1.1.4.20090105/build.xml: Added missing atomtype jar to dist-pure
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19:16 CIA-61 cdk: rajarshi * r13830 /cdk/branches/cdk-1.2.x/src/main/org/opensci​ence/cdk/smiles/smarts/SMARTSQueryTool.java: Updated javadocs
19:26 CIA-61 cdk: rajarshi * r13831 /cdk/branches/cdk-1.2.x/src/main/org/​openscience/cdk/isomorphism/matchers/​smarts/ExplicitConnectionAtom.java: removed unused code
19:54 CIA-61 cdk: rajarshi * r13832 /cdk/branches/cdk-1.2.x/src/ (3 files in 3 dirs): (log message trimmed)
19:54 CIA-61 cdk: Updated code to handle the * SMARTS pattern so that it ignores H's unless they
19:54 CIA-61 cdk: have an isotopic mass specification. This means * no longer matches [H][H] but
19:54 CIA-61 cdk: will match [1H][1H]. Added unit tests to take care of this and also updated
19:54 CIA-61 cdk: Javadocs for the query tool to note this behavior. Note that even matching
19:54 CIA-61 cdk: isotopic hydorgens is slightly ambiguous since it implicitly assumes that one is
19:54 CIA-61 cdk: dealing with an explicit H (i.e., an IAtom object with symbol H). ideally, *
20:25 CIA-61 cdk: rajarshi * r13833 /cdk/branches/cdk-1.2.x/src/test/org/openscience​/cdk/smiles/smarts/parser/SMARTSSearchTest.java: Uncommented a test
20:32 CIA-61 cdk: rajarshi * r13834 /cdk/branches/cdk-1.2.x/src/test/org/openscie​nce/cdk/smiles/smarts/parser/ParserTest.java: updated tests - thematching tests really should be removed since they just replicate the tests in SMARTSSearchTest
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21:55 CIA-61 cdk: rajarshi * r13835 /cdk/branches/cdk-1.2.x/src/test/org/openscience​/cdk/smiles/smarts/parser/SMARTSSearchTest.java: Uncommented out tests - they fail but we know why
22:24 CIA-61 cdk: rajarshi * r13836 /cdk/branches/cdk-1.2.x/src/main/org/​openscience/cdk/math/MathTools.java: Upadated to use % to check for even number since it is ~ 70X faster than the previous that used Math.floor along with casting to double
22:36 CIA-61 cdk: rajarshi * r13837 /cdk/branches/cdk-1.2.x/src/main/org/opensci​ence/cdk/smiles/smarts/SMARTSQueryTool.java: Fixed Javadocs

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